Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0001 ATGGCTGCTACTGTTGCTCTAAAAAAGTCTTGTAGAAGACTCCTCCCTTTCTATTCCACTCATATCTACTCTTGTTCTTGCTCCCACCCACCACCCTCACCCTCTCTCTCTTCAAATGGCTCTCCTTCCAATCCCAATCCTCTGTGGATGAGATCCATGGCCACTTTCACCAGAACAAAACCCCATGTTAATGTTGGAACTATTGGGCATGTTGATCACGGCAAGACTACACTCACTGCTGCTATCACCAGGGTTCTGGCAGATGAAGGTAAAGCTAAGGCTATAGCATTTGATGAAATTGATAAGGCTCCTGAAGAGAGGAAGAGAGGAATCACTATTGCAACTGCACATGTCGAGTATGAGACTGCAAAGCGACACTATGCACATGTCGACTGCCCTGGACATGCAGATTATGTTAAAAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATACTAGTTGTATCAGCGCCTGATGGTCCAATGCCTCAAACAAAGGAGCACATTCTTCTAGCTCGTCAAGTTGGTGTGCCATCTCTTGTGTGTTTTTTGAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGCTCCGGGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCAATCATCAGAGGTTCAGCGTTGTCCGCTTTACAGGGAACAAATGAAGAGATTGGAAGAAAGGCCATCCTAAAACTAATGGATGCTGTAGATGAATACATTCCCGACCCTGTTCGCCAGCTTGACAAACCATTCCTAATGCCAATTGAAGATGTTTTCTCAATTCAGGGACGAGGAACAGTAGCAACAGGCCGTGTTGAACAAGGAATCATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTAATGCAGGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTAGATCAAGGACAAGCCGGTGACAATGTTGGTCTACTTCTCCGTGGCCTTAAGCGTGAAGACATTCAACGTGGACAGGTCATTGCCAAGCCTGGTTCTGTAAAAACATCCAAGAAATTTGAAGCAGAGATATATGTACTCACGAAGGATGAGGGAGGGCGCCACACTGCTTTCTTTTCTAATTATAGACCTCAGTTTTACTTGAGGACTGCTGATATCACTGGGAAAGTAGAATTGCCTGAAAATGTTAAGATGGTTATGCCTGGAGATAACGTTACTGCAGTGTTTGAGTTGATTTTACCTGTTCCACTTGAAGCAGGACAAAGATTTGCCTTGAGAGAAGGAGGAAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAG 1344 0.4442 MAATVALKKSCRRLLPFYSTHIYSCSCSHPPPSPSLSSNGSPSNPNPLWMRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLADEGKAKAIAFDEIDKAPEERKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNEEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELILPVPLEAGQRFALREGGRTVGAGVVSKVLS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0001 447 CDD EFTU_III 353 442 - -
Lan19g0001 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 278 IPR027417 -
Lan19g0001 447 Hamap Elongation factor Tu [tuf]. 51 447 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lan19g0001 447 PRINTS GTP-binding elongation factor signature 64 77 IPR000795 GO:0003924|GO:0005525
Lan19g0001 447 PRINTS GTP-binding elongation factor signature 108 116 IPR000795 GO:0003924|GO:0005525
Lan19g0001 447 PRINTS GTP-binding elongation factor signature 128 138 IPR000795 GO:0003924|GO:0005525
Lan19g0001 447 PRINTS GTP-binding elongation factor signature 144 155 IPR000795 GO:0003924|GO:0005525
Lan19g0001 447 PRINTS GTP-binding elongation factor signature 181 190 IPR000795 GO:0003924|GO:0005525
Lan19g0001 447 PANTHER ELONGATION FACTOR TU 22 446 - -
Lan19g0001 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 356 446 IPR009001 -
Lan19g0001 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 101 116 IPR031157 -
Lan19g0001 447 TIGRFAM small_GTP: small GTP-binding protein domain 63 199 IPR005225 GO:0005525
Lan19g0001 447 Gene3D Translation factors 391 446 - -
Lan19g0001 447 Pfam Elongation factor Tu domain 2 277 346 IPR004161 GO:0005525
Lan19g0001 447 Gene3D Translation factors 258 387 - -
Lan19g0001 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 60 256 IPR000795 GO:0003924|GO:0005525
Lan19g0001 447 TIGRFAM EF-Tu: translation elongation factor Tu 52 446 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lan19g0001 447 Gene3D - 52 255 IPR027417 -
Lan19g0001 447 Pfam Elongation factor Tu C-terminal domain 351 445 IPR004160 -
Lan19g0001 447 SUPERFAMILY Translation proteins 255 352 IPR009000 -
Lan19g0001 447 PANTHER ELONGATION FACTOR TU-RELATED 22 446 - -
Lan19g0001 447 Pfam Elongation factor Tu GTP binding domain 60 253 IPR000795 GO:0003924|GO:0005525
Lan19g0001 447 CDD EFTU_II 263 350 IPR033720 -
Lan19g0001 447 CDD EF_Tu 61 255 IPR041709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0001 Lan-Chr19 20489 24056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0001 58 445 Eukaryotic Initiation Factors Gene Family AT5G60390 30.575 3.19e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0001 K02358 - gmx:100776891 753.436