Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1172 ATGGTTATGGATATGGATATTGTTGAGAAGGGTGCCTCAGAGGAGTGCCTCCCTGAGAGGAAAGGTCAGAAGAGGAAGCATGAATTCTCAGATGATGACTCATCTCACTTCTCCACCTTATTCTCCGACGTCGCTCAACAGGTTTCCATCCTCTCCGACTCCTTCTCTTCCAACGATTCTCATCGCGCCGCCGCTAAGCGTGCCACTCACGTCCTCGCTGATCTCGCCAAAAATGAGGAAGTAGTTAATGTCATTGTTGAAGGAGGAGCTATTCCGGCTTTGGTTATGCATCTTCAAGCACCTCCATTAGATCCAAATGATTCTTTTCACAACCCATTGCCGTTTGAGCATGAGGTTGAGAAAGGGAGTGCTTTTGCACTTGGTCTTCTTGCTGTCAAGCCAGAACATCAACAGTTCATTGTTGACAATGGTGCCTTAAAACATCTCGTTAATCTTTTGAAGAGGCACAATAGTGGCCTAACATCTCGTGCCGTTAATAGTCTTATCCGTAGGGCTGCAGATGCCATCACTAATCTTGCTCACGAAAACAGCAGCATCAAAACCCGTGTTAGGATGGAAGGTGGGATCCCACCACTTGTTGACTTGCTGCAAGTGGCTGATACAAAGGTGCAAAGGGCAGCTGCTGGTGCATTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATGAGATTGTTGAATGCAATGCTCTTCCAACTCTGATTCTAATGCTTCGTTCGGAAGATGCTGCTGTTCACTATGAAGCGGTTGGTGTTATTGGAAATCTGGTTCACTCTTCTCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCCTTGCAACCTGTTATTGGGTTACTTAGCTCCTGCTGCTCTGAAAGCCAGAGGGAAGCAGCTTTGTTACTTGGACAGTTTGCTGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCAGTCAGACCTCTGATAGATATGCTCCAGTCCCCTGATGTACAGCTCAGAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGATGCACATAACCAAGCTGGTATTGCACACAGTGGTGGCTTAATGCCATTGCTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCGTTTGCTCTTTACGGCCTCGCAGATAATGAGGATAATGTATCCGATTTTATTAGGGTAGGTGGAATTCAGAAATTGCAGGAAGGAGAGTTTATAGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTAATGGATGTGTGCTGAGCCATTTGTTACATCTTATGCGAGATTCAGAAAAGGCTTTCCAAAGAAGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCCCCGGATGATCAAAGAAAAATATTTATCGATCACCATGGTTTGGATTTGCTTATTGGGCTTCTTGGCTCTTCCAGCCCTAAGCAGCAACTTGATGGTGCAGTGGCTTTATGGAAGTTGGCCAATAAAGCTATGACTCTGTCTCCAATAGATGCTGCGCCTCCTTCCCCAACACCCCAGGTCTATTTAGGAGAGCAGTATGTAAACAATTCTAGCGTGTCTGATGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATCTGCCTACTTGCGTCTTCAGATGCATTTCGTGCAATGTTTGACGGTGGTTATCGGGAGAAGGATGCAAGGGACATAGAGATTCCAAATATCAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTCTTCATATTGCCCAAGATCTCCTTCGAGCAGCTGATCAATATCTTTTGGAAGGTCTTAAGAGACTCTGTGAGTACACGATCGCACAGGATATATCGCTTGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCTTTTAATGCCATCTCGTTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAGATTGAGTGCAAGGCCAGGACACTCTCATCTGATTCAGCGTGTAATGCCAGAGATACACAGTTACTTTGTTAAAGCTCTTACAAAGACCAATTCTCGCATCCAGCCGTAG 2112 0.4399 MVMDMDIVEKGASEECLPERKGQKRKHEFSDDDSSHFSTLFSDVAQQVSILSDSFSSNDSHRAAAKRATHVLADLAKNEEVVNVIVEGGAIPALVMHLQAPPLDPNDSFHNPLPFEHEVEKGSAFALGLLAVKPEHQQFIVDNGALKHLVNLLKRHNSGLTSRAVNSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVDLLQVADTKVQRAAAGALRTLAFKNDENKNEIVECNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIDMLQSPDVQLREMSAFALGRLAQDAHNQAGIAHSGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQKLQEGEFIVQATKDCVAKTLKRLEEKINGCVLSHLLHLMRDSEKAFQRRVALALAHLCSPDDQRKIFIDHHGLDLLIGLLGSSSPKQQLDGAVALWKLANKAMTLSPIDAAPPSPTPQVYLGEQYVNNSSVSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLHIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHACILFILEQFDRLSARPGHSHLIQRVMPEIHSYFVKALTKTNSRIQP* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1172 703 SMART BTB_4 537 634 IPR000210 GO:0005515
Lan18g1172 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 194 IPR000225 GO:0005515
Lan18g1172 703 SUPERFAMILY ARM repeat 49 409 IPR016024 -
Lan18g1172 703 Gene3D - 273 514 IPR011989 -
Lan18g1172 703 Gene3D - 28 164 IPR011989 -
Lan18g1172 703 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 15 698 - -
Lan18g1172 703 Pfam Armadillo/beta-catenin-like repeat 190 222 IPR000225 GO:0005515
Lan18g1172 703 Pfam Armadillo/beta-catenin-like repeat 309 348 IPR000225 GO:0005515
Lan18g1172 703 Pfam Armadillo/beta-catenin-like repeat 225 264 IPR000225 GO:0005515
Lan18g1172 703 CDD BTB_POZ_ARIA_plant 524 639 - -
Lan18g1172 703 SMART arm_5 309 349 IPR000225 GO:0005515
Lan18g1172 703 SMART arm_5 465 505 IPR000225 GO:0005515
Lan18g1172 703 SMART arm_5 133 181 IPR000225 GO:0005515
Lan18g1172 703 SMART arm_5 78 132 IPR000225 GO:0005515
Lan18g1172 703 SMART arm_5 225 265 IPR000225 GO:0005515
Lan18g1172 703 SMART arm_5 350 390 IPR000225 GO:0005515
Lan18g1172 703 SMART arm_5 267 307 IPR000225 GO:0005515
Lan18g1172 703 SMART arm_5 183 223 IPR000225 GO:0005515
Lan18g1172 703 SMART arm_5 423 464 IPR000225 GO:0005515
Lan18g1172 703 Gene3D - 165 272 IPR011989 -
Lan18g1172 703 ProSiteProfiles BTB domain profile. 537 604 IPR000210 GO:0005515
Lan18g1172 703 SUPERFAMILY ARM repeat 435 614 IPR016024 -
Lan18g1172 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 362 IPR000225 GO:0005515
Lan18g1172 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 194 229 IPR000225 GO:0005515
Lan18g1172 703 Pfam BTB/POZ domain 530 632 IPR000210 GO:0005515
Lan18g1172 703 Gene3D Potassium Channel Kv1.1; Chain A 518 663 IPR011333 -
Lan18g1172 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 361 403 IPR000225 GO:0005515
Lan18g1172 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 236 278 IPR000225 GO:0005515
Lan18g1172 703 MobiDBLite consensus disorder prediction 11 33 - -
Lan18g1172 703 SUPERFAMILY POZ domain 529 631 IPR011333 -
Lan18g1172 703 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 15 698 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1172 Lan-Chr18 16465608 16481164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1172 183 409 U-box Gene Family AT5G67340 28.509 2.25e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lan18g1172 BTB 1.8e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1172 - - gmx:100812456 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1172 18 16465608 16481164 Lan6g0016 6 140424 147292 LSH