Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1169 ATGGCTGTGGGGAAGAATAAGAGGATCTCAAAGGGAAAGAAGGGTGGGAAGAAGAAAGCCGCCGACCCCTTTGCCAAGAAAGATTGGTATGATATCAAGGCCCCTTCTCTTTTCCAGGTTAAGAATGTTGGCAAAACCCTTGTCTCTCGTACTCAGGGTACAAAGATTGCTTCAGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGATCTTCAAGGGGATGAGGATCATGCATTCAGGAAGGTTAGGTTGAGAGCTGAGGATGTTCAAGGGAAAAATGTTCTCACAAACTTCTGGGGAATGGATTTTACAACTGACAAGTTGAGGTCATTGGTGCGTAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTGAAGACCACTGATAACTACACTCTCAGGTTGTTCTGCATTGGTTTCACTAAGAGGCGTAGTAACCAGATTAAGAGGACCAGTTATGCCCAATCTAGCCAGATTAGACAGATCCGCAGGAAGATGAGGGAGATCATCGTCAACCATGCCACATCTGTCGACCTGAAAGAGTTGGTCAAGAAGTTCATCCCTGAGAGTATTGGGAAAGAGATTGAGAAGGCAACTTCTGGTATTTACCCTCTACAGAACGTGTATATCCGCAAAGTTAAGATCCTGAAAGCTCCCAAGTTTGATCTTGGCAAACTGATGGAGGTTCATGGTGATTACTCAGAAGATGTTGGTACGAAGGTGGACAGACCTGCAGATGAAACAACCGCTGAGCCAGCCCCTGAAATTGTTGGAGCTTGA 786 0.4504 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFRKVRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIGFTKRRSNQIKRTSYAQSSQIRQIRRKMREIIVNHATSVDLKELVKKFIPESIGKEIEKATSGIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPADETTAEPAPEIVGA* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1169 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Lan18g1169 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Lan18g1169 261 MobiDBLite consensus disorder prediction 1 20 - -
Lan18g1169 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Lan18g1169 261 MobiDBLite consensus disorder prediction 1 15 - -
Lan18g1169 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Lan18g1169 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Lan18g1169 261 MobiDBLite consensus disorder prediction 239 261 - -
Lan18g1169 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1169 Lan-Chr18 16449569 16451652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1169 1 261 Cytoplasmic Ribosomal Protein Gene Family AT3G04840 83.969 2.20e-160 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1169 K02984 - gmx:100808747 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0034 17 178360 180701 Lan18g1169 18 16449569 16451652 LSH
Lan18g1169 18 16449569 16451652 Lan6g0032 6 234140 236106 LSH