Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1167 ATGGACACACCACAGAAGAATCAGATCAATGCTGTTAACACCAACTCTATATTTGAGCATTCGCCCGTCTTCAACTTTATCAACAGTTTATCTCCTATCAAGTATGTTAAGAAGGCTGCTCCTATTACTCAGACTTTCAACTCACTTGTTTTTTCATCGCCTCCATCCGTTTTCACATCACCACATGTCAGTTCTCTCAAGGAATCCAGATTTATGAACAGACATATCGATGTCAAGAAAATCTATTCAAATGAAGAGGCTCTTGCAGATTCAACTCCTTTACATGGTAACTTGAGTGAAATACAGGAAAGTACCTATCAAAGGATCTTTGTAAGCAATGCTGCAATCGAGCTACCACAACCCTTAAAGTATAATTGTGGTAGAGCTGACAAAGCTAACAATCTCTTGGAGTTGCATGGTGAGGCAACATCAGATGTCCAGGAAGAAGGCTATGAAACAGATTCAGTTGAGCGCAAAGTTCTTCATGAAGGAATTGAACCAAAGAGTGAACGCTCAGAATGTGATTGGGATGGCTTAATTCCCGAATCCACTGATCTGTTGATTTTTAATTCACCTAATGAAGCAGGAGCTTTTCATGCCCTATTTTTGAAACCCTTGGACTCTTCTGTCAATTTTACGTCTCTATTACCACAAACTACCATCAATAATGATCCCAATGTGCAAATTGTTGATTCAGGTGCTTCTGGTTCTGACCATGAAAATGAAGATCGTCATTCGGAACCAGTAGCAGTCACAGAAACAGGCCAGGCATTGGACAATGTTGCCATGAATAGCATTCCAAATGAGAAAACGGATGATGAGCTTGTTTATGTGACACAACGTGGTCTGCGGAGGCGCTGTCTAGACTTTGAGATGGCTAGTGTGCTAGGAAAGAATTCAGATGATAATTCAAATACAGATTCCACTACTTCACAGTCTGTCAGGGAGAGTATTGCTAATGAAAAGCAACTAGTTCCTACAAAGCGCAATAGTGATTCGCGGAAGTGCATTTTGCCTGGAATCGGTTTACACTTGAATGCACTTGCAACCTTAAAAGATCGCAACAGCACTAAAATTGATGAGTTGTCTTCCGGAAGACAACTTAGTCTGCTTTGCTCCACTTCTTCATTGCAAATATCTACAAGCCAAGAACATCATCATCTAGCCCTTGTTGCTGTATCATCTGAAAGAGAACTGGATTTGTCAAACAATGGTGTTCACCCTGCTGAAGATTGTTCCCAGGCTCATGAATATCTCAATCAGAATAGCCCCAAAAGGAAAAGGCGTAAGTCGGACCCAGCTGGAGAAACCGAGGGCTGCAAGCGCTGTAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAATGCTTTGCTGCTGGTGTCTACTGCATCGAACCTTGTTCCTGTCAGGATTGCTTCAACCAAGCTATTCATGAAGATACTGTTCTTCAAACCCGCAAGCAGATCGAGTCTCGTAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAGTTCAGAGTCTGTGACTGAAGTTGGGGATGATCCAAATAAAACTCCAGCTTCAGCACGACATAAAAGAGGATGCAACTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATTGGCTGTAGATGTGAAGGGTGCAAGAATGCTTTTGGTAGAAAGGATGGTTCTGCTCTTATAGAAGTTGATCCAGAAGAAGAAACCGAAGCATGCGAAAAGGGTGTGGCGGAAAAAGCTTTACAGAAAACTGTAATTCAGAATATTGAAGATCATTCAGACCCTGCTCTTGTCTCAACACCGTCACGACTTTCCAGGCCACTGCTTCCACTGCCCTTTTCATCCAAGGGAAAGCCACCAAGATCTTTTGTCGCGACCATCTCGGGTTCTGCATTGTTTGCCAGCAGCAGCCAAAAGCTTGGGAAACCAAATTCAGTTTGGTCTCAATCCAAGCATTTTCAAACTGTTACAGATGATGAAATCCCGGATGTTCTCCGCAATGACAGCTCTCCTATCGCTTGCATCAAAACCTCTCCGAATGGCAAGAGGATCTCTTCTCCCAACTGTGACCTGGGATCATCTCCGAGTCGCAGAGGTGGCAGGAAGCTGATACTACAATCCATCCCTTCATTTCCATCTCTCACCAATCATCAGTAG 2190 0.4283 MDTPQKNQINAVNTNSIFEHSPVFNFINSLSPIKYVKKAAPITQTFNSLVFSSPPSVFTSPHVSSLKESRFMNRHIDVKKIYSNEEALADSTPLHGNLSEIQESTYQRIFVSNAAIELPQPLKYNCGRADKANNLLELHGEATSDVQEEGYETDSVERKVLHEGIEPKSERSECDWDGLIPESTDLLIFNSPNEAGAFHALFLKPLDSSVNFTSLLPQTTINNDPNVQIVDSGASGSDHENEDRHSEPVAVTETGQALDNVAMNSIPNEKTDDELVYVTQRGLRRRCLDFEMASVLGKNSDDNSNTDSTTSQSVRESIANEKQLVPTKRNSDSRKCILPGIGLHLNALATLKDRNSTKIDELSSGRQLSLLCSTSSLQISTSQEHHHLALVAVSSERELDLSNNGVHPAEDCSQAHEYLNQNSPKRKRRKSDPAGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNQAIHEDTVLQTRKQIESRNPLAFAPKVIRSSESVTEVGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEGCKNAFGRKDGSALIEVDPEEETEACEKGVAEKALQKTVIQNIEDHSDPALVSTPSRLSRPLLPLPFSSKGKPPRSFVATISGSALFASSSQKLGKPNSVWSQSKHFQTVTDDEIPDVLRNDSSPIACIKTSPNGKRISSPNCDLGSSPSRRGGRKLILQSIPSFPSLTNHQ* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1167 729 ProSiteProfiles CRC domain profile. 439 564 IPR005172 -
Lan18g1167 729 MobiDBLite consensus disorder prediction 296 331 - -
Lan18g1167 729 MobiDBLite consensus disorder prediction 683 711 - -
Lan18g1167 729 MobiDBLite consensus disorder prediction 421 440 - -
Lan18g1167 729 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 727 - -
Lan18g1167 729 MobiDBLite consensus disorder prediction 683 704 - -
Lan18g1167 729 MobiDBLite consensus disorder prediction 416 440 - -
Lan18g1167 729 MobiDBLite consensus disorder prediction 223 252 - -
Lan18g1167 729 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 727 IPR044522 GO:0003700
Lan18g1167 729 SMART CXC_2 524 565 IPR033467 -
Lan18g1167 729 SMART CXC_2 438 479 IPR033467 -
Lan18g1167 729 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 527 562 IPR005172 -
Lan18g1167 729 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 441 476 IPR005172 -
Lan18g1167 729 MobiDBLite consensus disorder prediction 297 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1167 Lan-Chr18 16436237 16440835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1167 18 726 CPP Transcription Factor Family AT4G14770 45.047 1.12e-153 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lan18g1167 TCR 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1167 - - gmx:100815907 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0037 17 190330 194472 Lan18g1167 18 16436237 16440835 LSH
Lan18g1167 18 16436237 16440835 Lan6g0033 6 237810 243115 LSH