Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1140 ATGGGTTCAAACTCAACCCAAACCGGTGCTGCTACTTCTACATTCAGAGGAGTACGCAAGAGAAAATGGGGTAAATGGGTATCTGAAATCCGTGAACCTGGCACCAAAACCAGAATCTGGTTAGGTAGCTTTGACACACCTCAAATGGCTGCATCTGCATACGATGTTGCAGCATTGCATTTCAGAGGCCGAGAAGCCAAACTCAACTTCCCTCATCTCTCCACAACGCTTCCTCTCCCTCTTAGCAACAATGCTCATCACATTCGCATGGCGGCGCATGAGGCTGCTCTCAGACACACGGCGGAGCATGGTGGTGGTGCTTGTGGTGGTTCTTCTACTTCGGTTGGAAGAGTGAGACTTTCACCTAGTCAGATTCAAGCTATCAATGACTCGCCACTTGATTCACCTAACATGTGGATGCAAATGCCAGATACTTTCATGGTTGATCATCATCATTCTATGATGTTTGTAAATGATTATGATTATGATTATGCGCAGTTTGAAGTGGAGAATGAGTGGGAGATTATGCACAATAATTCTCTATGGGATCCTTAG 555 0.4559 MGSNSTQTGAATSTFRGVRKRKWGKWVSEIREPGTKTRIWLGSFDTPQMAASAYDVAALHFRGREAKLNFPHLSTTLPLPLSNNAHHIRMAAHEAALRHTAEHGGGACGGSSTSVGRVRLSPSQIQAINDSPLDSPNMWMQMPDTFMVDHHHSMMFVNDYDYDYAQFEVENEWEIMHNNSLWDP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1140 184 SUPERFAMILY DNA-binding domain 13 72 IPR016177 GO:0003677
Lan18g1140 184 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Lan18g1140 184 Pfam AP2 domain 15 63 IPR001471 GO:0003700|GO:0006355
Lan18g1140 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 183 - -
Lan18g1140 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 6 183 - -
Lan18g1140 184 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Lan18g1140 184 CDD AP2 13 73 IPR001471 GO:0003700|GO:0006355
Lan18g1140 184 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Lan18g1140 184 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Lan18g1140 184 PRINTS Ethylene responsive element binding protein signature 53 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1140 Lan-Chr18 16286324 16286884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1140 13 184 AP2-EREBP Transcription Factor Family AT1G71450 53.672 4.60e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan18g1140 AP2 7.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1140 - - gmx:100815719 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1140 18 16286324 16286884 Lan6g0061 6 406891 407532 LSH