Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1119 ATGGGTAACAGCTGCAGCGGCGGCGGTGGCGGCGTCAGCCAGCTGAACTCTGAACCCTCAAATCCTAATTCCAATGGCATCTCTGTCCTCCCTCCTCATTCCAAACCCTCACCCCCCAAATCACCTCTTCCTTCCTCAACTACATCTTCCATGGGCCGCATACTGGGTCGGCCCATGGAAGATGTCCGTTCCACTTACGTCTTCGGCCGCGAACTCGGCCGAGGACAATTTGGAGTAACCTACCTGGTCACAAATAAATTGACCAAAGAACAATTCGCGTGCAAGTCAATCGCCACGCGCAAACTCATCCACCGTGACGATATCGACGATGTTTGCCGCGAGGTTCAGATCATGCACCACCTCACCGGCCACCGTAACATTGTTGAGCTCAAAGCTGCTTATGAGGACCGCCACTCCGTCAACCTCATCATGGAGCTCTGCGCCGGCGGCGAGCTTTTCGATAGGATCATTGCTAAGGGACATTACTCTGAGCGTGCTGCGGCGAACTTGTGCCGCCAGATCGTGACGGTGGTGCATAATTGTCACACCATGGGAGTTATGCATCGAGATCTGAAACCTGAGAATTTCTTGTTTCTGAGTAAGGATGAGAGTTCTCCTCTTAAAGCTACTGATTTTGGTCTCTCAGTGTTTTTCAAACCAGGAGATGTATTTAAAGATTTAGTCGGAAGCGCTTATTATGTTGCTCCTGAGGTGCTGCGGAGAAGTTATGGACCCGAAGCCGATATTTGGAGTGCTGGTGTTATCTTGTACATTCTCCTCTCTGGTGTACCTCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTGTTCTTCATGGACATATTGATTTCGCATCAGACCCTTGGCCTTCTGTATCAACTAATGCTAAAGATCTGGTCAAGAAGATGTTACGAGCTGACCCTAAAGAACGAATTTCTGCAGTTGATGTCCTCAATCATCCATGGATGAGAGAAGATGGAGCATCTGATAAGCCTCTTGATATTGCTGTTTTATCCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTTTGAAGGTTATTGCCGAAAATCTTTCCGAGGAAGAAATCATTGGCTTGAAGGAGATGTTCAAATCCATGGACACTGATAATAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTTCCGAAATTGGGTACTAAGCTTTCCGAGTCTGAAGTGAGGCAGTTGATGGAAGCAGCTGATGTAGATGGAAATGGAACAATCGATTATATTGAATTTATAACAGCTACCATGCACATGAATAGAGTGGAAAGAGAGGACCACCTATATAAAGCCTTCGAATATTTCGACAGTGATCGAAGCGGGTACATCACAACGGAAGAGTTGGAGTCTGCCCTTAAGAAGTATAATATGGGTGATGAAAAAACAATAAAGGAGATCATTGCTGAAGTTGACACAGACCATGATGGACGAATTAACTACGACGAGTTTGTAGCTATGATGAGGAAAGGCAACCCAGACATGGTAGGCAACAACCGACGTCGCAAATAA 1554 0.4614 MGNSCSGGGGGVSQLNSEPSNPNSNGISVLPPHSKPSPPKSPLPSSTTSSMGRILGRPMEDVRSTYVFGRELGRGQFGVTYLVTNKLTKEQFACKSIATRKLIHRDDIDDVCREVQIMHHLTGHRNIVELKAAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLSKDESSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAVLHGHIDFASDPWPSVSTNAKDLVKKMLRADPKERISAVDVLNHPWMREDGASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRVEREDHLYKAFEYFDSDRSGYITTEELESALKKYNMGDEKTIKEIIAEVDTDHDGRINYDEFVAMMRKGNPDMVGNNRRRK* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1119 517 ProSiteProfiles EF-hand calcium-binding domain profile. 438 472 IPR002048 GO:0005509
Lan18g1119 517 Pfam EF-hand domain pair 441 503 IPR002048 GO:0005509
Lan18g1119 517 Pfam EF-hand domain pair 371 431 IPR002048 GO:0005509
Lan18g1119 517 SMART efh_1 406 434 IPR002048 GO:0005509
Lan18g1119 517 SMART efh_1 370 398 IPR002048 GO:0005509
Lan18g1119 517 SMART efh_1 442 470 IPR002048 GO:0005509
Lan18g1119 517 SMART efh_1 477 505 IPR002048 GO:0005509
Lan18g1119 517 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Lan18g1119 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Lan18g1119 517 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Lan18g1119 517 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Lan18g1119 517 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 509 - -
Lan18g1119 517 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Lan18g1119 517 Gene3D Transferase(Phosphotransferase) domain 1 152 331 - -
Lan18g1119 517 ProSiteProfiles EF-hand calcium-binding domain profile. 473 508 IPR002048 GO:0005509
Lan18g1119 517 Gene3D Phosphorylase Kinase; domain 1 68 151 - -
Lan18g1119 517 CDD STKc_CAMK 66 323 - -
Lan18g1119 517 ProSiteProfiles Protein kinase domain profile. 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g1119 517 MobiDBLite consensus disorder prediction 1 56 - -
Lan18g1119 517 MobiDBLite consensus disorder prediction 1 31 - -
Lan18g1119 517 SMART serkin_6 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g1119 517 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Lan18g1119 517 SUPERFAMILY EF-hand 362 503 IPR011992 -
Lan18g1119 517 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 33 509 - -
Lan18g1119 517 Pfam Protein kinase domain 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g1119 517 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Lan18g1119 517 SUPERFAMILY Protein kinase-like (PK-like) 63 334 IPR011009 -
Lan18g1119 517 Gene3D - 332 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1119 Lan-Chr18 16172022 16177988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1119 52 515 EF-hand Containing Proteins AT4G23650 81.290 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan18g1119 Pkinase 3.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1119 K13412 - gmx:100817321 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1119 18 16172022 16177988 Lan18g1119 18 16172022 16177988 ECH
Lan17g0112 17 646572 652670 Lan18g1119 18 16172022 16177988 LSH