Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1115 ATGGGTCACCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGCCTTTGGTCCCCTGAGGAAGATGAGAAACTTATTAGATATATCACCACTCATGGCTATGGCTGTTGGAGTGAAGTTCCTGACAAAGCTGGGCTTCAAAGGTGTGGAAAGAGTTGTAGATTGAGATGGATAAATTATTTGAGGCCAGATATTAGAAGAGGAAGGTTCACACATGAGGAAGAGAAGTTAATTATAAGTCTTCATGGGGTCGTTGGCAACAGATGGGCTCATATTGCTAGTCACTTACCTGGTAGAACTGACAATGAAATAAAGAATTACTGGAATTCTTGGATCAAAAAGAAAATCCGAAAGCATTCAGCAGTGACTTCATCCGCAGCCATTGCACAAAGTGTTGATCATCCTCATCATCAGTTCAATTATAACCAAAATAATCTAACTATAACAGCAAAAACACCACTTCAAGAAACCCTATTTCCTTCCACTACATGCCCCTTATTTATGTTTGACACTAGTTCACTGGATACTGGGATAACATTAACAGACACCAATGGAAAAGGAGAACAACTCTTTCAAGATAATAATGATTGTTTGAGCTCTCAAACATGGACTTTGAGCCACCATCAAGTTCAAGCCCTACCTACTACTTTCACACCATCTTTGGTTATGGATAATGCAAATTTTCTTCCACCATTGATTGAGAACATTGAGGACATGGCTCCAAATGATGAAGTACATCATTGCAGTATAGATGAGGAAGAAGAAATAACACTGGAGTGCCTGCATAGGCAAGAGTTTAATCAATTATGGGTGGAGACACAGCAACAATGTCCTAGCTTTCTTTTTTGGGACAACCTTGAAGGACAACTTGGAGGGGAAGCACTAGTACCAACTTCATCAAATATGGAAATAAATACACTTTCTCCTTTTCCTTCTACTTTGTGA 945 0.3937 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYLRPDIRRGRFTHEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKHSAVTSSAAIAQSVDHPHHQFNYNQNNLTITAKTPLQETLFPSTTCPLFMFDTSSLDTGITLTDTNGKGEQLFQDNNDCLSSQTWTLSHHQVQALPTTFTPSLVMDNANFLPPLIENIEDMAPNDEVHHCSIDEEEEITLECLHRQEFNQLWVETQQQCPSFLFWDNLEGQLGGEALVPTSSNMEINTLSPFPSTL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1115 314 CDD SANT 69 112 IPR001005 -
Lan18g1115 314 PANTHER MYB TRANSCRIPTION FACTOR 1 312 - -
Lan18g1115 314 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan18g1115 314 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lan18g1115 314 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan18g1115 314 CDD SANT 17 61 IPR001005 -
Lan18g1115 314 Gene3D - 68 137 - -
Lan18g1115 314 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan18g1115 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan18g1115 314 SMART sant 66 114 IPR001005 -
Lan18g1115 314 SMART sant 13 63 IPR001005 -
Lan18g1115 314 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan18g1115 314 PANTHER MYB DOMAIN PROTEIN 55 1 312 - -
Lan18g1115 314 Gene3D - 6 66 - -
Lan18g1115 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1115 Lan-Chr18 16150294 16152660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1115 1 296 MYB Transcription Factor Family AT1G63910 49.014 2.31e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan18g1115 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1115 K09422 K02947 gmx:100803556 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1115 18 16150294 16152660 Lan18g1115 18 16150294 16152660 ECH
Lan18g1115 18 16150294 16152660 Lan18g0193 18 1798986 1801468 PCT