Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1113 ATGGGATTTCCAGAGCTTCTAATTCCAAAGGCATTTGTTCACATCCTTTCCTTATTAGGTTTCATCAGAAACCTGATCCTCATCTTCTTCCGCTACCTCGGCCTCCATGATTTCCTCGAACCCGACATTGTCTGGCCCCACCCGCCGCCACAATTCCAATCTGTATCCGCCGTACTCATCCGCGAAATTCTGCCGGTGGCGAAGTTCTCCGACCTGGAGGAGCCTTCGGCGGAGAGCTGCGCCGTGTGTCTGTACGAATTTGAAGCAGATGAAGAGATCAGACGGTTGAGAAATTGTCGCCATATATTCCATAAGGGTTGTTTAGACCGTTGGATAGAGTATGATCAGAAAGCATGTCCCTTGTGTAGGACACCCTTCATACCTTATGATATGCAACGTGCTTTCAATGAGAGGCTATGGCTTGCTTCTGGAATCCCTGAATTCTATTCTGAATATCCTCACATCACTGATTTCTAG 477 0.4759 MGFPELLIPKAFVHILSLLGFIRNLILIFFRYLGLHDFLEPDIVWPHPPPQFQSVSAVLIREILPVAKFSDLEEPSAESCAVCLYEFEADEEIRRLRNCRHIFHKGCLDRWIEYDQKACPLCRTPFIPYDMQRAFNERLWLASGIPEFYSEYPHITDF* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1113 158 SUPERFAMILY RING/U-box 64 134 - -
Lan18g1113 158 PANTHER BRH1 RING FINGER PROTEIN 1 152 - -
Lan18g1113 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 129 IPR013083 -
Lan18g1113 158 ProSiteProfiles Zinc finger RING-type profile. 80 123 IPR001841 -
Lan18g1113 158 CDD RING-H2 80 123 - -
Lan18g1113 158 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 152 - -
Lan18g1113 158 SMART ring_2 80 122 IPR001841 -
Lan18g1113 158 Pfam Ring finger domain 79 123 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1113 Lan-Chr18 16137757 16138285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1113 1 144 C3H Transcription Factor Family AT1G63840 56.667 7.71e-57 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1113 K16281 - jre:109014495 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1113 18 16137757 16138285 Lan18g1113 18 16137757 16138285 ECH
Lan18g1113 18 16137757 16138285 Lan18g0197 18 1873412 1881287 PCT