Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1109 ATGGATGGGATAGAAGCTATGTCATTTTCAGGTAATTCTGGTTCACATTTCATACATAGAGAAGTAAATGTTTCTGGTTCTGGTTTCAGAAATTTGTTGAATGTGAGAGATGGTTCTTCTGGTTCTCCATTTTCAGTAGAGCTTCCTCAGAATGATAATTTTAGTAATGGCTTTAGCATTTGTACCCCTTCTGGATTAGTACCTTCTTCAGAGGAGTCTGTGAAGAAGAAAAGAGGGAGGCCAAGAAAATATGGTCCCAATTATGATCCAGTTTCCTTGAGACTCTCTCCAATGTCTGCCAATGCTGATTCCACCCCTGCTTCAACAACCATTTCTTCCGAGAAACGGCCTCGAGGCCGCCCTCCCGGAAGTGGAAGGAAGCAGCAACTAGCCTCTCTAGGTGAATGGATGAATAATTCTGCAGGACAAGCTTTTTCACCTCATGTTATCACCATAGGAGTTGGGGAGGACATTGTAGCAAAGTTATTGTTGTTTGCACAGCAGAGACCAAGGGCTCTATGCATTTTGTCAGGCACCGGGACAATTTCTTCAGCCACTATGCATCAACCTACTTCTACTACTGGCAGTGTTACCTATGAGGGGCGATTTCAAATATTATGTTTGTCTGGATCTTACTTGGTTGCCGAAGACGACGGAGCTCGCCATAGAACAGGTGGCATGAGTGCTTCCCTTTCTAGTCCCGATGGTCATATTATTGGTGGTGGTGTTGCTAATCGCTCGCCATAG 747 0.4444 MDGIEAMSFSGNSGSHFIHREVNVSGSGFRNLLNVRDGSSGSPFSVELPQNDNFSNGFSICTPSGLVPSSEESVKKKRGRPRKYGPNYDPVSLRLSPMSANADSTPASTTISSEKRPRGRPPGSGRKQQLASLGEWMNNSAGQAFSPHVITIGVGEDIVAKLLLFAQQRPRALCILSGTGTISSATMHQPTSTTGSVTYEGRFQILCLSGSYLVAEDDGARHRTGGMSASLSSPDGHIIGGGVANRSP* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1109 248 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 23 244 - -
Lan18g1109 248 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 245 IPR005175 -
Lan18g1109 248 MobiDBLite consensus disorder prediction 97 115 - -
Lan18g1109 248 CDD DUF296 147 244 IPR005175 -
Lan18g1109 248 PRINTS AT-hook-like domain signature 75 85 IPR017956 GO:0003677
Lan18g1109 248 PRINTS AT-hook-like domain signature 113 124 IPR017956 GO:0003677
Lan18g1109 248 ProSiteProfiles PPC domain profile profile. 142 248 IPR005175 -
Lan18g1109 248 SUPERFAMILY AF0104/ALDC/Ptd012-like 143 245 - -
Lan18g1109 248 MobiDBLite consensus disorder prediction 65 129 - -
Lan18g1109 248 Gene3D - 147 247 - -
Lan18g1109 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 23 244 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1109 Lan-Chr18 16116217 16118990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1109 1 243 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 47.826 7.92e-73 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1109 - - lang:109332745 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1109 18 16116217 16118990 Lan6g0102 6 679154 684185 LSH
Lan18g1109 18 16116217 16118990 Lan18g0218 18 2180969 2185880 PCT