Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1091 ATGTTATTCCATTCCACCACAGTTGTTTTGAATCCTCAACCTCACACTCTCTTCTCTCCATTCCCTTTCTTCCTTTCCACTCCAATTCCTCGAAAGCTTCTATCTTTACAAACTCTCAATTTCCCCACTCACTCGAACCTTTTCTATTCTCAACATGATTTCCAACAACATGTTCTCGGTGACTCTCTCATTTTTGAAGATGGTGTTTTTGAAGACCCTATTCTCCAAAACAACATCAATTCCTACAATCTCACCAAACCCAAAAGGAAAAAGAAAAAGAGAAATGTGGCACCACCACAAATTGTGGCTGAGAATTTGGTTCCTGAGAAGTGGAGGCAAATTCAAGATGAGATTAACATAGCGAAGAAAGAGAGTAGGAAGATTGCACAGGAGATGGAGTTAGATAGCAAGGTTGATAAGAAGAGAAGAGGTTTGATTCCATTGAAGGATTTGAATATGGATGAGTATAAGGCTTATAAGGAAGCTAAATTGGCACAGCTGAAACCACTTGTTCTTGATAACCCTTCAAGGTTTCCGGTGAAAGAAGAAGACTTTGTCGAAAAAGAAGAAGATAGTGACGACGATGATGATGATGACGATGAGTTTGGTGGTACTGAACGTGTTAAGCCAAAGAATCCTCGATGGGCTGTTTATGGAAGGAGTTTGGAGGATGTCTCTGAGTTTTTGAATAGTGAGTATTATGATCCTCATGCTAATAAGAACTCTCAAGGTCGTCAGAAGTTGTTTACTAAGGAGGAGAATGTTTTGTTGAAAAGGGGAATACCAGACTTGGCAAGTGCTAGTTCAGATAAATGGCTTCCTCTGCACACTTTAGCTGCATGCGGAGAATTTTATCTTGTAGATTCTTTGATGAAACATAATGTTGATATTAATGCTGTGGATAAGGATGGTTTGACTGCACTTCACAAAGCAATAATTGGCAAAAATCAGGCCATAACCAATTATCTGCTGATAAATTCAGCTAATCCATTTGTAAAGGATAAAGATAGGGCCACCTTGATGCACTATGCAGTACAAACAGCTTCTAGCCAGACAATTAAAATACTTTTACTGTATAACGTGGATATAAATCGTCCCGACAATGATGGCTGGACACCGTTACATCTTGCTGTTCAAACTCAGAGAACAGATTTAGTGAGGCTTCTGCTCATTAAAGGTGCTAATAAGACATTAAAAAACAAGGATGGTTTAACTCCTCTTGACCTTTGCCTTTACCTTGGTCAATGTCTTAGAACATATGAGCTAATCAAATTGTTGAAGCAGCAACCTAAGTTGAAGTCCAATTTTGAAATTGTTGAACAAACAAATCAAAGATTATAG 1341 0.384 MLFHSTTVVLNPQPHTLFSPFPFFLSTPIPRKLLSLQTLNFPTHSNLFYSQHDFQQHVLGDSLIFEDGVFEDPILQNNINSYNLTKPKRKKKKRNVAPPQIVAENLVPEKWRQIQDEINIAKKESRKIAQEMELDSKVDKKRRGLIPLKDLNMDEYKAYKEAKLAQLKPLVLDNPSRFPVKEEDFVEKEEDSDDDDDDDDEFGGTERVKPKNPRWAVYGRSLEDVSEFLNSEYYDPHANKNSQGRQKLFTKEENVLLKRGIPDLASASSDKWLPLHTLAACGEFYLVDSLMKHNVDINAVDKDGLTALHKAIIGKNQAITNYLLINSANPFVKDKDRATLMHYAVQTASSQTIKILLLYNVDINRPDNDGWTPLHLAVQTQRTDLVRLLLIKGANKTLKNKDGLTPLDLCLYLGQCLRTYELIKLLKQQPKLKSNFEIVEQTNQRL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1091 446 Gene3D - 221 434 IPR036770 -
Lan18g1091 446 Pfam Ankyrin repeats (3 copies) 319 400 IPR002110 GO:0005515
Lan18g1091 446 SMART ANK_2a 369 398 IPR002110 GO:0005515
Lan18g1091 446 SMART ANK_2a 402 438 IPR002110 GO:0005515
Lan18g1091 446 SMART ANK_2a 270 299 IPR002110 GO:0005515
Lan18g1091 446 SMART ANK_2a 303 332 IPR002110 GO:0005515
Lan18g1091 446 SMART ANK_2a 336 365 IPR002110 GO:0005515
Lan18g1091 446 MobiDBLite consensus disorder prediction 186 202 - -
Lan18g1091 446 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN, CHLOROPLASTIC-LIKE 41 431 - -
Lan18g1091 446 ProSiteProfiles Ankyrin repeat profile. 303 335 IPR002110 GO:0005515
Lan18g1091 446 ProSiteProfiles Ankyrin repeat region circular profile. 369 401 - -
Lan18g1091 446 ProSiteProfiles Ankyrin repeat profile. 369 401 IPR002110 GO:0005515
Lan18g1091 446 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 41 431 - -
Lan18g1091 446 ProSiteProfiles Ankyrin repeat profile. 336 368 IPR002110 GO:0005515
Lan18g1091 446 ProSiteProfiles Ankyrin repeat profile. 270 302 IPR002110 GO:0005515
Lan18g1091 446 SUPERFAMILY Ankyrin repeat 255 415 IPR036770 -
Lan18g1091 446 MobiDBLite consensus disorder prediction 183 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1091 Lan-Chr18 15986028 15989871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1091 275 414 Ion Channels AT2G25600 31.429 1.55e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1091 - - gmx:100815562 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1091 18 15986028 15989871 Lan6g0224 6 1712693 1715750 LSH