Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1090 ATGGCTGAATCTCCATTACCACCACCACCGAGAATGAATTCGAGGTCCCCTTCTCCATGGAGAGCTCAGTCAAGGTCGAGATCCCGATCAAAGTCTAGGCCTAGGTCTAGGTCAAGATCTATTCCAAGACAAAGGCCTAGATCCCATTCACAAAGTCGTGGCAGATCAAGAGAAAGAAGTCCTGAAAGGACTGAAGTAAACAATCCTGGAAACACACTTTATGTGACCGGCTTATCTTCCAGGGTCTCTGAGAGAGACCTACAGGAGCATTTCTCCAAGGAGGGAAAAGTTGCTTCTTGTTTTCTCGTGGTGGAGCCCCGTACGCGTATTTCTCGTGGTTTTGCTTTTATTACAATGGACACTGTTGAGGATGCAAGCCGCTGTGTTAAGTATCTCAATCAATCCGTTTTAGAAGGTCGCTCCATCACTGTTGAGCGGTCACGGAGAAAGCGACCAAGAACTCCTACTCCAGGACACTATCTTGGACTTAAAAATACGAGAGATTCTGGATATCGTGGTGACCATGGAGATCGTGGTGGCCGTGGAGATCGTGGTGACTATGGAGATCGTGGTGGCCGTGGAGATCGTGGTGACCGTGGAAGGTATCGAGGTGGATCAGGCCGTGATGATTATCAATACCGTCGCTCTCCAAGGCGCTCACCATATCAAGGTGGCAGGGATTATTCACCAAGGCACTCACCCTATGGTGGAAGATCTAGGAGGGCTCGGTCAAGGTCACTTCCTTATTCCCCCTATGGTAGCCCAGATCGGAGATATACCCGAGGAGCTAGGTGA 795 0.4969 MAESPLPPPPRMNSRSPSPWRAQSRSRSRSKSRPRSRSRSIPRQRPRSHSQSRGRSRERSPERTEVNNPGNTLYVTGLSSRVSERDLQEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDASRCVKYLNQSVLEGRSITVERSRRKRPRTPTPGHYLGLKNTRDSGYRGDHGDRGGRGDRGDYGDRGGRGDRGDRGRYRGGSGRDDYQYRRSPRRSPYQGGRDYSPRHSPYGGRSRRARSRSLPYSPYGSPDRRYTRGAR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1090 264 MobiDBLite consensus disorder prediction 143 264 - -
Lan18g1090 264 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 9 260 - -
Lan18g1090 264 Gene3D - 13 156 IPR012677 -
Lan18g1090 264 SUPERFAMILY RNA-binding domain, RBD 66 179 IPR035979 GO:0003676
Lan18g1090 264 MobiDBLite consensus disorder prediction 168 216 - -
Lan18g1090 264 PANTHER RNA RECOGNITION MOTIF 9 260 - -
Lan18g1090 264 MobiDBLite consensus disorder prediction 1 15 - -
Lan18g1090 264 MobiDBLite consensus disorder prediction 1 75 - -
Lan18g1090 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Lan18g1090 264 SMART rrm1_1 72 145 IPR000504 GO:0003723
Lan18g1090 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Lan18g1090 264 MobiDBLite consensus disorder prediction 26 50 - -
Lan18g1090 264 CDD RRM_RBMX_like 70 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1090 Lan-Chr18 15982116 15985118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1090 73 156 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 5.31e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1090 K12897 - twl:120015257 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0173 17 1090987 1093994 Lan18g1090 18 15982116 15985118 LSH