Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1078 ATGTCGAAGGCTAGAATCACCGGCATTGTTCAAAGGTTCAACAATTCCAAAGGCTTTGGCTTCATCAAACCCGATGATGGCGGTGACGATCTCTTCATTCACTACTCTTCCATCCGATCCGACGGTTTCCGAACCCTCGTTGAAGGTGATCGCGTTGAGTTCACCGTCGGAACTGGTGACGACGGCAAACTCAAGGCTCTCGATGTTACCGGCGTCAACGGTGCCCCGCTCCGCTCCACTGTAGAGAATAACGCCGGTCGTGGCGGCGGTGGTGATGGATGTTATCAGTGTGGTGAATTTGGTCACATGGCTAGGGATTGCAACCGTGGCTCCAATGTCGGTGGTGGTCGTGGCGCCGGTGGAGCTGGATGCTATCAGTGCGGTGAATTTGGCCACCTCGCTAGGGATTGCAACCGTGGTTCCAATGCTGGTGTTTGTTATAATTGCGGTGGAATAGGGCACATGGCTAGGGATTGCACAAGTGGAAGAAACAGTGGTGGTGGTGGTGGCGGTGGCGGTGGTTGTTACAACTGTGGTGGATTTGGACACATGGCTAGGGATTGCTTGAAGGGGAGCAATGGTGGTGGTGGCGGTGGTGGTGGGGGATCGTGCTACAATTGTGGCGAGTTTGGGCACATGTCGAGGGACTGCAACGTTGGAAGTGGCGATCGTGATCGTCCTCGTGCTGGTGGTAATGGTGGAGGTTGCTATAGATGCGGTGAAGTCGGTCACTTGGCTAGGGATTGCAACAAAGAAGGTGGAAGCTATGGTGGTGGGAATGGTGGAAGCTATGGTGGTGGCAATGGTGGAAGCTATGGTGGTGGGAATGGTGGAAGCTATGGTGGTGGGAACGATGGAAACCGCACTTGCTTCAATTGTGGTAAGCCTGGCCACTTTGCTAGGGAATGCATTGAAGCTTCTGGATAG 927 0.5394 MSKARITGIVQRFNNSKGFGFIKPDDGGDDLFIHYSSIRSDGFRTLVEGDRVEFTVGTGDDGKLKALDVTGVNGAPLRSTVENNAGRGGGGDGCYQCGEFGHMARDCNRGSNVGGGRGAGGAGCYQCGEFGHLARDCNRGSNAGVCYNCGGIGHMARDCTSGRNSGGGGGGGGGCYNCGGFGHMARDCLKGSNGGGGGGGGGSCYNCGEFGHMSRDCNVGSGDRDRPRAGGNGGGCYRCGEVGHLARDCNKEGGSYGGGNGGSYGGGNGGSYGGGNGGSYGGGNDGNRTCFNCGKPGHFARECIEASG* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1078 308 Gene3D - 6 80 IPR012340 -
Lan18g1078 308 SUPERFAMILY Nucleic acid-binding proteins 5 74 IPR012340 -
Lan18g1078 308 ProSiteProfiles Zinc finger CCHC-type profile. 124 137 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 Gene3D - 281 308 - -
Lan18g1078 308 Gene3D - 227 257 - -
Lan18g1078 308 Pfam Zinc knuckle 288 303 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 Pfam Zinc knuckle 174 188 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 Pfam Zinc knuckle 145 161 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 Pfam Zinc knuckle 123 137 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 Pfam Zinc knuckle 203 217 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 Pfam Zinc knuckle 93 107 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 Pfam Zinc knuckle 235 250 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 Gene3D - 117 171 - -
Lan18g1078 308 SMART c2hcfinal6 289 305 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 SMART c2hcfinal6 174 190 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 SMART c2hcfinal6 145 161 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 SMART c2hcfinal6 123 139 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 SMART c2hcfinal6 235 251 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 SMART c2hcfinal6 93 109 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 SMART c2hcfinal6 203 219 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 SMART csp_8 7 72 IPR011129 GO:0003676
Lan18g1078 308 PANTHER COLD SHOCK PROTEIN 2 82 167 - -
Lan18g1078 308 PANTHER COLD SHOCK PROTEIN 2 1 80 - -
Lan18g1078 308 PANTHER COLD SHOCK PROTEIN 2 164 307 - -
Lan18g1078 308 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lan18g1078 308 SUPERFAMILY Retrovirus zinc finger-like domains 116 163 IPR036875 GO:0003676|GO:0008270
Lan18g1078 308 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 80 - -
Lan18g1078 308 PANTHER COLD SHOCK DOMAIN PROTEIN 2 164 307 - -
Lan18g1078 308 PANTHER COLD SHOCK DOMAIN PROTEIN 2 82 167 - -
Lan18g1078 308 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lan18g1078 308 SUPERFAMILY Retrovirus zinc finger-like domains 83 139 IPR036875 GO:0003676|GO:0008270
Lan18g1078 308 SUPERFAMILY Retrovirus zinc finger-like domains 195 252 IPR036875 GO:0003676|GO:0008270
Lan18g1078 308 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Lan18g1078 308 ProSiteProfiles Zinc finger CCHC-type profile. 290 303 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 ProSiteProfiles Zinc finger CCHC-type profile. 175 188 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 ProSiteProfiles Zinc finger CCHC-type profile. 236 249 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 ProSiteProfiles Zinc finger CCHC-type profile. 204 217 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 SUPERFAMILY Retrovirus zinc finger-like domains 273 304 IPR036875 GO:0003676|GO:0008270
Lan18g1078 308 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lan18g1078 308 Gene3D - 172 226 - -
Lan18g1078 308 ProSiteProfiles Zinc finger CCHC-type profile. 94 107 IPR001878 GO:0003676|GO:0008270
Lan18g1078 308 Gene3D - 81 116 - -
Lan18g1078 308 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lan18g1078 308 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lan18g1078 308 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lan18g1078 308 ProSiteProfiles Zinc finger CCHC-type profile. 146 161 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1078 Lan-Chr18 15910741 15912006 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lan18g1078 CSD 1.7e-22 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1078 K09250 - gmx:100806783 288.885