Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1071 ATGGAAACTCAACAACCAAATGAGGATGGGGGCAGTAGTGGAAAAGGTGGATTTATGAGCAGGCAAAGTAGTACAAGGTGGACTCCCACAACAGACCAAATAAGAATATTGAAGGATCTTTACTACAACAATGGAATAAGATCCCCAAGTGCTGAACAGATTCAGAGGATCTCTTCTAGGCTGAGACAGTACGGTAAGATTGAAGGAAAGAATGTGTTTTATTGGTTCCAAAACCACAAAGCTCGAGAAAGACAGAAGAAAAGGTTCACTTCTGATATTCCCATGCAAAGAGTTGGGTCTACTAATGCTGCTGTTTCTGCATGGAAACATGATGAACCACCCATTCATGCCAAGTATTCTAACATATCCACTGGGGTTTCTTCCACACCATCTTCTTCTGCTGGAATTGTTACTATGGGCCACATGGGGAATTATGGGCATGGGTCTGTGCCCATGGAGAAGAGTTTTAGGGACTGTTCAATATCAGCAGGAGGTAGCAGTGGCCATGTTGGTGGTGCCATAAACCACAATTTGGGATATTTTGGTATGGAACAATATTCTTCACCCTACACTTTCTTAGAAAAAACAAGGCCAAGTGGAGAAACCATGGAAGAAGAAGAAGAACAACAAGTAGTGGATGGTTCCCCTGAGATACAAACACTCCCTTTATTCCCTGTGCACTGTGAAGACATTCATGGCTATTGCAACCTAAGGTCTAACTCTTCTAACTATGTTAGTGGCTGGTATCAGACAGAAGATGGATTCATGAATGGTTCTCGTGCTTCCATGGAACTCAGTCTCAACTCTTACACACGCAAATCTCCAGATTACTCTTGA 837 0.4265 METQQPNEDGGSSGKGGFMSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISSRLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDIPMQRVGSTNAAVSAWKHDEPPIHAKYSNISTGVSSTPSSSAGIVTMGHMGNYGHGSVPMEKSFRDCSISAGGSSGHVGGAINHNLGYFGMEQYSSPYTFLEKTRPSGETMEEEEEQQVVDGSPEIQTLPLFPVHCEDIHGYCNLRSNSSNYVSGWYQTEDGFMNGSRASMELSLNSYTRKSPDYS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1071 278 SUPERFAMILY Homeodomain-like 17 91 IPR009057 -
Lan18g1071 278 CDD homeodomain 25 87 IPR001356 GO:0003677
Lan18g1071 278 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 272 IPR044555 GO:0003700|GO:0099402
Lan18g1071 278 SMART HOX_1 22 90 IPR001356 GO:0003677
Lan18g1071 278 PANTHER PROTEIN WUSCHEL 1 272 - -
Lan18g1071 278 Pfam Homeodomain 24 85 IPR001356 GO:0003677
Lan18g1071 278 Gene3D - 19 85 - -
Lan18g1071 278 ProSiteProfiles 'Homeobox' domain profile. 20 86 IPR001356 GO:0003677
Lan18g1071 278 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1071 Lan-Chr18 15842028 15843097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1071 18 230 Wox Gene Family AT2G17950 41.502 1.16e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lan18g1071 Homeodomain 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1071 - - vra:106776674 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0201 17 1310929 1313097 Lan18g1071 18 15842028 15843097 LSH
Lan18g1071 18 15842028 15843097 Lan6g0216 6 1632450 1633956 LSH