Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1063 ATGGAACATCAACCACTCCTTGCTCAAGGTGCTACGGATTTGAAGGACGTTGTCATGAACGACGCCGTTTTGAAAAGCAAACGGGGTCGTCCAGCTAAAGGTGTTCAGAAAACGACACCGTCTTTGTCAAGGCCCAAGAAGGAAGAAGATGTTTGTTTTATTTGCTTTGACGGTGGAAGCCTCGTTCTCTGTGATCGCCGGGGTTGCCCTAAAGCATATCATCCTGCGTGTATTAAGCGAGATGAAGCTTTTTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGCAGTGTTTGTCAGAAGGCATCCCATTATATGTGCTATACTTGTACATATTCTTTGTGCAAGGGATGTTCAAAAACTGCTGATTTTGTCAGTGTCAGAGGAAATAAAGGTTTTTGTGCAATATGCATGAAAACTATAATGCTGATTGAGAATACTGCTCAAGGAAATAATGCAATGTGTGAAGTGGATTTCAATGACAAGAGCAGCTGGGAGTATCTTTGCAAGGTGTATTGGACATCTTTGAAACAGGACCTGTCTTTAACAATGGATGAGATCCTTCAAGCTAAAAACCCATGGAAAGGTGCTGCCCTGAGTTGTAAGGTTGGAACTCCCCATGAACTTTATCATCTTAAAGACGAGAAAGGTTCTGGATCTGAGAACTCCTGTATAGACACAGAATCAGATAATTCAAATAACAAGAAGCCTAAGAGAAGTGATGAACAGATACATATTGTGGATGGTGTCTTGAATAATGTTGGGTGCCATACGCAAGACTTGCCCATTACCCGTGAGCTGATCGGTGGCATATGTATACACAAGAATCAGATCAACCCTAATGATGCATCACCTGATGATAGCACTAGTATAGGAGTTGTGAGATCAGAAGCGTCTGGTGTTGCATTGGATATGTCGTCATTGCTTATCTCTACAGGGACTGAGCAACCACTTGGTGATTCTGTGAATGATAAATTGTGGCATTACCTGGATCCAACTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTACAGGTGGAAAGAAAGTGGACATTTCCCTTCAGATCTCAGAATATGGAGGATAGGTGAGAAACAAGATTTCTCTGTATTGTTAACGGATGCCCTAGATGGGAAGTGTTCCAGAAATGTGTCATTACCTTACAATGGCCAGCTGCTGTCCTTACGGCCCAGTTTTATTTTGGATAATAAAGGTAATAGTCAGGATATTGGGAGAATTGCATCAAGGAATGAAATTCACACAGACGGTCTAGTTATCGAAAAGGGTGGGGAGCAAAAGGTGGATGGTACTTGTACACATTCCAATGGTAAATATGAATCTATTAGGAGCAATGGACTTAGCAATGAGGGGCAAAGTGGAAACTTTCTAAGGAGAGAGGAGTCATCGAAATACGAATTTTTTAGTCACAACCATCCCGATGTATATCCTTCACTGCCTTCAACTGCCTTTTCGGATAAATTTCTGGAAGGTCTTGGGATTGAGGCAAACCTGGAAGATAGTGAAAATCATGGCTTGAATAGGGCTTCTGAAGGTCAGAGTAATAGTGGGCAGAGTTATCAGAAACAATCAGATAGTGAAGAGAATTCGAGGCAATCTTCTGGACAGAACTGGGAATGCCCTCAAGTAATTAATCCAGTGTGTAATGCATCGACATGGCTGGCAATCTTTGGTGAGCCTACTGATTGTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAGGCAATGGAGTCACGTGGTGCTGGCACGGAATCTCCCACTTCAATCATGAAAAGTGGTGAGGAATTGACTGACAGTTCTAAAACAGATTTTCTCAGTTTTGTAGGTGGGTTTAGCACAATGCTTGATACAGGTAAAGGTGATGCACTGAGCTCCACTGGTGATTTACACTTTCCATCTCAATCAACAGCAGCAGCGGAACCATTTCGTCAAACTGATGCATATCATAATCCTCAAAGAATATCTGGGATGAATTCCTCAAAAAGTCCTGAAGATGATGAGTCTACTTTCTTAACAATTGGCTGGAATCCTACCAGCTGGGATCCAAAATGTTAA 2085 0.4221 MEHQPLLAQGATDLKDVVMNDAVLKSKRGRPAKGVQKTTPSLSRPKKEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSVCQKASHYMCYTCTYSLCKGCSKTADFVSVRGNKGFCAICMKTIMLIENTAQGNNAMCEVDFNDKSSWEYLCKVYWTSLKQDLSLTMDEILQAKNPWKGAALSCKVGTPHELYHLKDEKGSGSENSCIDTESDNSNNKKPKRSDEQIHIVDGVLNNVGCHTQDLPITRELIGGICIHKNQINPNDASPDDSTSIGVVRSEASGVALDMSSLLISTGTEQPLGDSVNDKLWHYLDPTGKVQGPFSMLQLYRWKESGHFPSDLRIWRIGEKQDFSVLLTDALDGKCSRNVSLPYNGQLLSLRPSFILDNKGNSQDIGRIASRNEIHTDGLVIEKGGEQKVDGTCTHSNGKYESIRSNGLSNEGQSGNFLRREESSKYEFFSHNHPDVYPSLPSTAFSDKFLEGLGIEANLEDSENHGLNRASEGQSNSGQSYQKQSDSEENSRQSSGQNWECPQVINPVCNASTWLAIFGEPTDCDESVSDLLAEVEAMESRGAGTESPTSIMKSGEELTDSSKTDFLSFVGGFSTMLDTGKGDALSSTGDLHFPSQSTAAAEPFRQTDAYHNPQRISGMNSSKSPEDDESTFLTIGWNPTSWDPKC* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1063 694 CDD GYF 326 379 IPR003169 GO:0005515
Lan18g1063 694 ProSiteProfiles Zinc finger PHD-type profile. 49 115 IPR019787 -
Lan18g1063 694 MobiDBLite consensus disorder prediction 516 548 - -
Lan18g1063 694 CDD PHD5_NSD 51 96 - -
Lan18g1063 694 MobiDBLite consensus disorder prediction 436 463 - -
Lan18g1063 694 SMART gyf_5 327 382 IPR003169 GO:0005515
Lan18g1063 694 Pfam GYF domain 329 371 IPR003169 GO:0005515
Lan18g1063 694 ProSitePatterns Zinc finger PHD-type signature. 52 112 IPR019786 -
Lan18g1063 694 SUPERFAMILY FYVE/PHD zinc finger 46 104 IPR011011 -
Lan18g1063 694 SUPERFAMILY GYF domain 323 379 IPR035445 -
Lan18g1063 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 142 IPR013083 -
Lan18g1063 694 MobiDBLite consensus disorder prediction 214 242 - -
Lan18g1063 694 PANTHER UNCHARACTERIZED 557 660 - -
Lan18g1063 694 PANTHER UNCHARACTERIZED 16 245 - -
Lan18g1063 694 PANTHER UNCHARACTERIZED 294 554 - -
Lan18g1063 694 PANTHER BNAC08G48800D PROTEIN 294 554 - -
Lan18g1063 694 PANTHER BNAC08G48800D PROTEIN 557 660 - -
Lan18g1063 694 PANTHER BNAC08G48800D PROTEIN 16 245 - -
Lan18g1063 694 MobiDBLite consensus disorder prediction 591 606 - -
Lan18g1063 694 MobiDBLite consensus disorder prediction 512 548 - -
Lan18g1063 694 Gene3D - 328 384 IPR035445 -
Lan18g1063 694 SMART PHD_3 51 97 IPR001965 -
Lan18g1063 694 MobiDBLite consensus disorder prediction 658 686 - -
Lan18g1063 694 MobiDBLite consensus disorder prediction 655 694 - -
Lan18g1063 694 ProSiteProfiles GYF domain profile. 326 380 IPR003169 GO:0005515
Lan18g1063 694 MobiDBLite consensus disorder prediction 438 463 - -
Lan18g1063 694 MobiDBLite consensus disorder prediction 587 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1063 Lan-Chr18 15763316 15767390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1063 49 122 PHD Transcription Factor Family AT4G14920 36.486 3.58e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1063 - - aip:107642933 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0209 17 1418399 1422157 Lan18g1063 18 15763316 15767390 LSH
Lan18g1063 18 15763316 15767390 Lan6g0194 6 1414076 1417905 LSH