Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1051 ATGTCATTGAAAAGCATACTACGAGAACTCAAGGAGATGAGAGGTGGTATTGGTAGCATATCAAGGCGAGGTGCACAAAGCAAGCATTGGCACAGTCGTACGAAGTCATACATAGTTCCCGATGTCACAGTAACTCCACTTGAACCTATTCCACAAGGACCATGGGCAAACCTACCTCCTGAATTACTTCTGGACATAATCCGGAGGGTTGAAGAGAGTGAGACGTCCTGGCCTGCACGCGCTGTCATTGTTTCTTGTGCTTCAGTGTGTAAATCATGGAGGGTCGTTACAAAAGAGACTGTCAAGACTCCTGAGCAATGTGGAAGGCTCACATTTCCCATTTCATTGAAGCAGCCGGGTCCTCGTGATTCTCCAATCCAGTGCTTTATCAGGAGGAACAGGGAAACTTCTACATTTCTATTGTACTTCGGTCTGGTGCCATCGGAGAATGAAACTGATAAATTGTTATTAGCTGCGAAAAAGATAAGAAAGGCAACAGGCACAGACTTTGTCATATCTTTGGTTTCAGACGAGTTTTCTCCGTCCAGCAGTGCATATGTTGGAAAACTGAGGTCTAATTTTTTGGGGACCAAGTTCACTATATATGACAGCCAACCTCCATGTGAAGCTGAAATTCAATCAAATAGCCGTTCAAATAGGAGATTTCACTCTAAGCATGTGTCTCCAAGATTTCCAGTATGTAACCATGTTGTTAGCACCATCGCTTATGAACTCAATGTTCTCCGTACAAGAGGGCCAAGAAGAATGCACTGCACCATGAACTCCATATCTATCTCAGCTATTCAGGAAGGGGGCAGCGCCCCAACTCCCACTTCTTTACCTCAAAGTATTGATAGACATTTTTCTCCCTCACCAGCATTGAAAGGAAAAGGTCCAGTTACAGAGTTAAACTCTGAAAGCCTCTCAGAGCTACCGATGCAAAACCAAGGCTCGGTTGAGCCTCTTGTACTTAAAAACAAGGTTCCCAGATGGCATGAGCAGCTGCAATGCTGGTGCCTAAACTTCAAGGGTCGCGTTACAGTGGCTTCTGTTAAAAACTTCCAACTTGTGGCTGCTGTAGATCCATCACATAATGTTTCTGCTTCAGAACAAGAAAAGGTGATCTTGCAGTTTGGAAAGATCGGAAAAGACATATTTACCATGGATTACCTTTATCCACTCTCTGCCTTCCAAGCCTTTGCAATATGCTTAAGCAGCTTCGATACAAAACCCGCATGTGAATGA 1245 0.4418 MSLKSILRELKEMRGGIGSISRRGAQSKHWHSRTKSYIVPDVTVTPLEPIPQGPWANLPPELLLDIIRRVEESETSWPARAVIVSCASVCKSWRVVTKETVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTFLLYFGLVPSENETDKLLLAAKKIRKATGTDFVISLVSDEFSPSSSAYVGKLRSNFLGTKFTIYDSQPPCEAEIQSNSRSNRRFHSKHVSPRFPVCNHVVSTIAYELNVLRTRGPRRMHCTMNSISISAIQEGGSAPTPTSLPQSIDRHFSPSPALKGKGPVTELNSESLSELPMQNQGSVEPLVLKNKVPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSASEQEKVILQFGKIGKDIFTMDYLYPLSAFQAFAICLSSFDTKPACE* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1051 414 Pfam Tub family 116 409 IPR000007 -
Lan18g1051 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Lan18g1051 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lan18g1051 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lan18g1051 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Lan18g1051 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Lan18g1051 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Lan18g1051 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Lan18g1051 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Lan18g1051 414 Pfam F-box domain 55 98 IPR001810 GO:0005515
Lan18g1051 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Lan18g1051 414 Gene3D - 49 102 - -
Lan18g1051 414 PANTHER TUBBY-RELATED 1 414 - -
Lan18g1051 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Lan18g1051 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Lan18g1051 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Lan18g1051 414 SUPERFAMILY F-box domain 49 116 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1051 Lan-Chr18 15673092 15676238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1051 1 414 TUB Transcription Factor Family AT2G18280 64.115 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan18g1051 Tub 2.3e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1051 K19600 - gmx:100798958 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0236 17 1603758 1607085 Lan18g1051 18 15673092 15676238 LSH
Lan18g1051 18 15673092 15676238 Lan6g0174 6 1270441 1273786 LSH