Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1050 ATGGAGCAACTAAATAATATACTAACCTTTACAATAAAAGCTTACTGGAAGAAATGCTTTTCTCATGTTTATGTCCTCTCTCTCTCTCCATCTCCTATTGTCACAACAAGCATAACAACCACCCCAATTGATAGCATACCTAACCCCCCAAGAACAACAACATCACATATAACCGCAGCTACGACCACAACCGCGGCAATAAGATACCGAGAATGTCTGAGGAACCACGCAGCCTGCATGGGGAGTCATGTGGTAGATGGATGTGGAGAGTTCATGCCGAGTGGAGAAGAAGGCACCATAGAATCACTTAAGTGTGCTGCTTGTGATTACCACAAAAAAGAAGTTGAAGGGGAATCTCAACAACATGCTTCTAATTATCAAACTTATCATCCCAATAAGCACAACAACACTCACAATATAATACATTTTCCTCCTCCTCCTCCTCATTATAATGATCATCATCATAATCATACTCACCTTCAGTTCCACACACCATCTTCTTCTATGCATCAACAGCATAGATTTTCTAACGGGGTTGGCACCCCTACAAGCCTGGTTACCCCAATGATGATGCCCATCGGAAGCGGTGGCGTTCCCCCTGAGTCCTCCAGCGAAGATCTCAACATGTTTCAGTATAATAGTGGACAGATATTAGTGCAGCCACCAACACTGTCAAAGAAGAGGTTTAGGACAAAGTTCACACAGCAACAAAAGAATAGGATGATGGAGTTTGCTGAGAAGCTGGGATGGAAGATTCAGAAACAAGATGAGCAAGAATTGCAGCAATTTTCTTCACAAGTTGGTATCAGAAAACAAGTGTTCAAGGTTTGGATGCACAATAACAAGCAAGCAATGAAGAAGCAACAAATGTAA 873 0.4204 MEQLNNILTFTIKAYWKKCFSHVYVLSLSPSPIVTTSITTTPIDSIPNPPRTTTSHITAATTTTAAIRYRECLRNHAACMGSHVVDGCGEFMPSGEEGTIESLKCAACDYHKKEVEGESQQHASNYQTYHPNKHNNTHNIIHFPPPPPHYNDHHHNHTHLQFHTPSSSMHQQHRFSNGVGTPTSLVTPMMMPIGSGGVPPESSSEDLNMFQYNSGQILVQPPTLSKKRFRTKFTQQQKNRMMEFAEKLGWKIQKQDEQELQQFSSQVGIRKQVFKVWMHNNKQAMKKQQM* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1050 290 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 43 288 - -
Lan18g1050 290 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 288 - -
Lan18g1050 290 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 226 283 IPR006455 -
Lan18g1050 290 Gene3D - 220 287 - -
Lan18g1050 290 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 68 112 IPR006456 -
Lan18g1050 290 Pfam ZF-HD protein dimerisation region 67 112 IPR006456 -
Lan18g1050 290 ProSiteProfiles 'Homeobox' domain profile. 224 288 IPR001356 GO:0003677
Lan18g1050 290 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 118 IPR006456 -
Lan18g1050 290 SUPERFAMILY Homeodomain-like 221 287 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1050 Lan-Chr18 15663450 15664728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1050 67 287 ZF-HD Transcription Factor Family AT1G75240 46.552 1.57e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan18g1050 ZF-HD_dimer 3.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1050 - - lang:109332583 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0240 17 1637070 1639330 Lan18g1050 18 15663450 15664728 LSH
Lan18g1050 18 15663450 15664728 Lan6g0172 6 1261008 1262850 LSH