Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1047 ATGATGCATCGTTCTTGCAGTGACTCTCATCAAGGGCACGTGATGGGACCTTGCTCTTGTGGTATGTTTCATAGCCAAACGAGTTCATTTTCTATGCTATTCTCCATGCCAAACCACAAACCCTATGATTATGAATATGATCATCATGAACCACAAAACATGTATCCATCATTTACTGGTACTCCTTCTTCATCTAACGTGGACTGCACCCTCTCACTTGGAACCCCATCAACACGTTTGACTGAAGATGAAGAGAAGCGAAGTCGCCATGAACGTCGTTCAGGTTCGAACTTTTGCTGGGATTTACTACAAACTAAACACAGCCCTCAGTCGCAAACTAAGTCCAACAGAGGCAGCAATAGTAACAACACCAATGACTCTCTTCTCCCTCGACGCTGCGCTAACTGCGACACCACTTCAACACCTCTTTGGAGGAATGGACCTCAAGGCCCAAAGTCACTCTGCAATGCCTGTGGGATCAGATTCAAGAAAGAAGAGAGAAGAGCTAGTGCTGCCGCCGCCACGCCGTCAGTGGCCTCTGGCGGCGTAGTGGAATCGGCGCAGATGTATAGCCACCATAACAACTCATGGTTTGCACACTCGCAGAGCCAGAAGATGCAGTGTCTCTCTCCTTCAATGGGGAATGAGACCCGTTACATGGACCATGATGCCGATCGTGATTCCGAGAATGGCATTCCCTTCCTCTCTTGGAGACTCAACGTCACGGACAGAACAAACTTCGTTCACGACTTTACAAGATAA 762 0.4803 MMHRSCSDSHQGHVMGPCSCGMFHSQTSSFSMLFSMPNHKPYDYEYDHHEPQNMYPSFTGTPSSSNVDCTLSLGTPSTRLTEDEEKRSRHERRSGSNFCWDLLQTKHSPQSQTKSNRGSNSNNTNDSLLPRRCANCDTTSTPLWRNGPQGPKSLCNACGIRFKKEERRASAAAATPSVASGGVVESAQMYSHHNNSWFAHSQSQKMQCLSPSMGNETRYMDHDADRDSENGIPFLSWRLNVTDRTNFVHDFTR* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1047 253 MobiDBLite consensus disorder prediction 107 132 - -
Lan18g1047 253 PANTHER GATA TRANSCRIPTION FACTOR 18 2 252 - -
Lan18g1047 253 Pfam GATA zinc finger 133 167 IPR000679 GO:0006355|GO:0043565
Lan18g1047 253 CDD ZnF_GATA 132 164 IPR000679 GO:0006355|GO:0043565
Lan18g1047 253 PANTHER GATA TRANSCRIPTION FACTOR 18 2 252 IPR044272 GO:0003700|GO:0009908
Lan18g1047 253 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 129 171 - -
Lan18g1047 253 ProSitePatterns GATA-type zinc finger domain. 133 158 IPR000679 GO:0006355|GO:0043565
Lan18g1047 253 MobiDBLite consensus disorder prediction 53 93 - -
Lan18g1047 253 Gene3D - 129 206 IPR013088 GO:0006355|GO:0008270
Lan18g1047 253 MobiDBLite consensus disorder prediction 79 93 - -
Lan18g1047 253 ProSiteProfiles GATA-type zinc finger domain profile. 131 163 IPR000679 GO:0006355|GO:0043565
Lan18g1047 253 MobiDBLite consensus disorder prediction 54 78 - -
Lan18g1047 253 SMART GATA_3 127 179 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1047 Lan-Chr18 15649591 15651782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1047 19 253 C2C2-Gata Transcription Factor Family AT3G50870 43.243 4.40e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan18g1047 GATA 4.6e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1047 - - gmx:100790571 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0243 17 1658954 1660714 Lan18g1047 18 15649591 15651782 LSH
Lan18g1047 18 15649591 15651782 Lan6g0171 6 1257233 1258904 LSH