Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1039 ATGAATCATCAAAATATTGAAGACCAAATCATGCTCATGTCTCAGTTATACTCTTCCGGTCCATACACCCAAATAGGAGCTCAACAAGGGGAGAATAAGAAGCCAAGAAGGAGGCGTAATAAGAAGTGCAAAGGAGGAGAAAACGGAGGTTTGGAATCAAACAAGAAGAGAAAACTGAGTGATGAACAAATTAATATGCTTGAGCAAAGTTTTGGTAATGAACATAAACTTGAATCTGAAAGGAAGGACAAGTTGGCAATGGAGCTTGGTTTAGATCCTCGTCAAGTGGCTGTGTGGTTCCAAAACAGAAGAGCACGTTGGAAGAACAAGAAATTGGAGGAAGGGTACTCTAACCTCAAAAAAGCACATGAAGCCACCATGCTCGAGAAATGTCTTCTTGAAACTGAGGTGTTGAAGCTGAAAGAACAATTATCTGAGGCTGAGAAAGAAATTCAGGTTCTAAAGCATACTGATAGAGTTTCTAGCAACAGCCCCAGTTCATCACAGCAGTCTCAGTCAATGGAGGTGGTAGTGGACCCACCATTTCTTGGAGAGTTTCATGTTGATGGATATGATGATGTGTTTTACGTGCCCGAGACCCATTACATCAATGGCATGGAATGGGTTAATTTGTACATTTGA 642 0.4112 MNHQNIEDQIMLMSQLYSSGPYTQIGAQQGENKKPRRRRNKKCKGGENGGLESNKKRKLSDEQINMLEQSFGNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEGYSNLKKAHEATMLEKCLLETEVLKLKEQLSEAEKEIQVLKHTDRVSSNSPSSSQQSQSMEVVVDPPFLGEFHVDGYDDVFYVPETHYINGMEWVNLYI* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1039 213 MobiDBLite consensus disorder prediction 22 59 - -
Lan18g1039 213 CDD homeodomain 55 111 IPR001356 GO:0003677
Lan18g1039 213 MobiDBLite consensus disorder prediction 157 174 - -
Lan18g1039 213 Pfam Homeodomain 55 109 IPR001356 GO:0003677
Lan18g1039 213 SUPERFAMILY Homeodomain-like 54 118 IPR009057 -
Lan18g1039 213 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Lan18g1039 213 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Lan18g1039 213 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Lan18g1039 213 MobiDBLite consensus disorder prediction 44 59 - -
Lan18g1039 213 MobiDBLite consensus disorder prediction 155 174 - -
Lan18g1039 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 212 - -
Lan18g1039 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 212 IPR045224 GO:0003700
Lan18g1039 213 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Lan18g1039 213 Gene3D - 46 118 - -
Lan18g1039 213 Coils Coil 137 157 - -
Lan18g1039 213 SMART HOX_1 53 114 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1039 Lan-Chr18 15577920 15589020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1039 1 213 Homeobox Transcription Factor Family AT4G36740 55.405 1.60e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lan18g1039 Homeodomain 5.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1039 K09338 - gmx:100809616 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0261 17 1793642 1795509 Lan18g1039 18 15577920 15589020 LSH
Lan18g1039 18 15577920 15589020 Lan6g0158 6 1141563 1142654 LSH