Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1029 ATGGCGAGTAGTGATTTTGGGGAATCAACGACGTCGTTTTCTTCACCGAACCCATCGTGCTCAGGTATTAATAACAATTTTAACAACGATGCTGGTGATTTTGAATGCAACATATGCTTCGATTTAGCTCAGGATCCAGTCATCACTCTCTGTGGTCACTTATTCTGTTGGCCGTGCCTATACCAGTGGCTCCATCATCACTCTCATTCACAAGAGTGTCCCGTTTGCAAGGCCCTCGTGCAAGAAGAGAAATTGGTTCCTCTTTATGGGAGAGGAAAGAATCAGACTGATCCGAGAACTAAGTCATATCCTGGAATGGAGATTCCTCATCGTCCTTCGGGGCAGAGGCCACAGACAGCGCCGCCTCCTCCTCCTCATCCCGAGGCTGTTAACCCATTTGGGAGTTATGGGTTTGGATTGATAGGAGGGTTTATTCCTATGGCCACTGCTAGATTTGGGAACTTAACACTTTCTACTGCATTCGGTGGGTTTATTCCGTCTCTGCTCAACATTCAATTCCATGGGTTTCAAGATGCCACTGTATACGGGATGACGTCGGGTTATCCCTTTGGGTTTAACGCATTTCATGGAAGGGGGGTGCGTGGTTTTTGGCAGGAAACTGGTCGGGCGCAGGGGCAGGAGGACAAAGTTTTGAAGAATCTGCTTTTGCTGGTTGGTTTTCTTGTCCTTCTTACTGTTATTTTTCTGTGGTAA 714 0.4706 MASSDFGESTTSFSSPNPSCSGINNNFNNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYQWLHHHSHSQECPVCKALVQEEKLVPLYGRGKNQTDPRTKSYPGMEIPHRPSGQRPQTAPPPPPHPEAVNPFGSYGFGLIGGFIPMATARFGNLTLSTAFGGFIPSLLNIQFHGFQDATVYGMTSGYPFGFNAFHGRGVRGFWQETGRAQGQEDKVLKNLLLLVGFLVLLTVIFLW* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1029 237 MobiDBLite consensus disorder prediction 90 128 - -
Lan18g1029 237 CDD RING-HC_AtRMA_like 34 78 - -
Lan18g1029 237 SUPERFAMILY RING/U-box 32 89 - -
Lan18g1029 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 235 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan18g1029 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 100 IPR013083 -
Lan18g1029 237 ProSiteProfiles Zinc finger RING-type profile. 36 77 IPR001841 -
Lan18g1029 237 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 235 - -
Lan18g1029 237 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Lan18g1029 237 SMART ring_2 36 76 IPR001841 -
Lan18g1029 237 Pfam Zinc finger, C3HC4 type (RING finger) 35 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1029 Lan-Chr18 15318470 15319827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1029 24 235 C3H Transcription Factor Family AT2G23780 63.256 3.60e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1029 K10666 - gmx:100814783 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1029 18 15318470 15319827 Lan6g0150 6 1096171 1097520 LSH