Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1027 ATGGGAATAGCAACAACACAACCACTTCCAAGTACCATTCTCCCTCACTCAAAGACACACCATTCATTTTTCATCTTTGAGGACAGTCCAGGTGAATCTTGTTCCAATTCTATGTCCCAAGATAATCAACACGGAATCTTCACCTTCTCCAATGGGTTCGAGAGAACCACAGTGACTCATCACGACCAGCAGCAGCAACATCAGCAGGAGCATCAGATCCGGAGGGACAAAGTGAGGTTACAACAAGGCTTTGAACCATCACTACAACTTCCACCGCAACCACCATTAGTTGTGATAGAAGAAGAACAGGGAGGGCTCATGCCGTCAGGGATGCTGTCAGAGATGTTTAAGTTTCCTCATGGCGGTGCCACCGTCGCTGAATTATTGGAACAGCAGCAGATGACGGCGACGCTTCGGTCATCGAGGCCACAACCAGTGGCCAGTGGTAGCGAATGCTACGGAAGCAGACAAGGGATAATAACAACTGGTTTGGGACCGTCGGCAGATTCAACGAAGAACCATTATCAAAATAGCAGCCATCATCATCATCATCATTCTCAGATTTCAAGCATCAATAATGCAGCAGACATAGCAACTCATCAAGCCATGCAACTTTTTCTTATGAACCCACAAACAAGATCTCCTTCTCCTCCTCTTCCTCCTTCAAATCCTCTTCAAGGTTTCGCTACCGGTTCAACGGCTGGAGATTCTTTTGGTCAGTTCACATGGATTACTGATCACATTAATGAAGAAGGAGGCACAACTGGTGGAGTTGTGGAAGGTCAAGGTCTCTCATTATCATTGTCCTCTTCGTTGCAGCATTGGGAGGCTGCAAAAGCTGAAGAATTGAGGATGGGGGAAAGTGGTTTTCTATATTACAATCAAGGACCTGGACCTGGGGGTTCTTCTTCTTCAACCCAGTATCCGTACAAGAAAATTGGCGGTAGTCATCCTCATCAGCAATCATTGCATTTACATGGTGCTATTGTACACCAGGGACATCATGTTGGATTCGGATCACCATCATCATCATCCTTAGGTATAGTGAATGTTATGAGAAACTCAAAGTATGTTAAAGCTGCACAAGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAACAAGTTCAGTAAACAGAACTCAAACCCTAATGATTTAAACACCGGTGGCGGTGGTCCATCTAATTCACCTTCATCAAAAGATCCTCTTCCTCCTACAACATTGTCTGCGGCAGATAGGATTGAGCATCAGAGAAGGAAGGTCAAATTTCTATCGATGTTTGATGAGGTGGAGCGGAGATACAACCACTACTGCGAACAAATGCAAATGGTAGTGAACTCATTCGATATAGTAATGGGTTTTGGAGCAGCAATACCATACACTGGTTTGGCGCAGAAAGCAATGTCAAGGCATTTCAGATGCCTGAAGGATGCAATAACAGCACAAATGAAGCATAGTTGTGAGGTGCTGGGAGAGAAAGATGGAAGTGGTTCATCAGGTTTGACAAAGGGAGAGACACCAAGGCTTAAGATGCTTGAACAAAGCCTAAGACAGCAGAGAGTGTTCAATCAAATCGGGATGATGGAACAAGAAGCTTGGAGACCACAGAGAGGGTTGCCTGATAGATCTGTTAACATTTTGAGAGCCTGGCTTTTCGACCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGTCACGACAAACTGGACTATCGAGAAATCAGGTATCAAATTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCTATGGTGGAAGACATGTACCAACAAGAACTTAAAGAAGCAGAGGGTAGTTCAGAAGAGAGAGAAAATATGAACCAAAGCAATAGTGGCCAACTTGTTCAAACTTCAACAGCAACAGCTTCACCACCACCAACAATATGCAAAAGATCCGATATCAATGCTCATGAAAACGACCCTTCAGTCGTTGCAATCAATAGAAAAACCTTATCGGAAAACCAACCAATTAAGCAATGTAGCTCTTCCACCACCACAACCACCATTATGACCCCTCCCTCTGAGGTGGCGCCACCAGTGTCTCAGTGCTTTGACTCAGACCTGACCCCCCATAGATCAATGGCAACTGATGAGATATGTCACTATGGGACCGCGGTTTCTGAAGGTGGTGCTGACATTGGATCCAATCTAATTAGATTTGGGACCATCGCCGGTGACGTGTCACTTACCCTAGGGTTACGCCACGACGGTAACATGCCCCAGAAAACACGTTTCTCTGTTAGAGACTTCGGAGGCATTTAA 2307 0.4512 MGIATTQPLPSTILPHSKTHHSFFIFEDSPGESCSNSMSQDNQHGIFTFSNGFERTTVTHHDQQQQHQQEHQIRRDKVRLQQGFEPSLQLPPQPPLVVIEEEQGGLMPSGMLSEMFKFPHGGATVAELLEQQQMTATLRSSRPQPVASGSECYGSRQGIITTGLGPSADSTKNHYQNSSHHHHHHSQISSINNAADIATHQAMQLFLMNPQTRSPSPPLPPSNPLQGFATGSTAGDSFGQFTWITDHINEEGGTTGGVVEGQGLSLSLSSSLQHWEAAKAEELRMGESGFLYYNQGPGPGGSSSSTQYPYKKIGGSHPHQQSLHLHGAIVHQGHHVGFGSPSSSSLGIVNVMRNSKYVKAAQELLEEFCSVGRGQFKKNKFSKQNSNPNDLNTGGGGPSNSPSSKDPLPPTTLSAADRIEHQRRKVKFLSMFDEVERRYNHYCEQMQMVVNSFDIVMGFGAAIPYTGLAQKAMSRHFRCLKDAITAQMKHSCEVLGEKDGSGSSGLTKGETPRLKMLEQSLRQQRVFNQIGMMEQEAWRPQRGLPDRSVNILRAWLFDHFLHPYPSDADKHLLSRQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGSSEERENMNQSNSGQLVQTSTATASPPPTICKRSDINAHENDPSVVAINRKTLSENQPIKQCSSSTTTTTIMTPPSEVAPPVSQCFDSDLTPHRSMATDEICHYGTAVSEGGADIGSNLIRFGTIAGDVSLTLGLRHDGNMPQKTRFSVRDFGGI* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1027 768 Pfam Homeobox KN domain 555 594 IPR008422 GO:0003677|GO:0006355
Lan18g1027 768 MobiDBLite consensus disorder prediction 618 643 - -
Lan18g1027 768 CDD homeodomain 538 599 IPR001356 GO:0003677
Lan18g1027 768 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 99 757 - -
Lan18g1027 768 MobiDBLite consensus disorder prediction 210 231 - -
Lan18g1027 768 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 99 757 - -
Lan18g1027 768 Gene3D - 541 603 - -
Lan18g1027 768 SMART HOX_1 538 602 IPR001356 GO:0003677
Lan18g1027 768 MobiDBLite consensus disorder prediction 669 695 - -
Lan18g1027 768 MobiDBLite consensus disorder prediction 607 651 - -
Lan18g1027 768 MobiDBLite consensus disorder prediction 669 690 - -
Lan18g1027 768 MobiDBLite consensus disorder prediction 379 410 - -
Lan18g1027 768 MobiDBLite consensus disorder prediction 164 189 - -
Lan18g1027 768 ProSiteProfiles 'Homeobox' domain profile. 535 598 IPR001356 GO:0003677
Lan18g1027 768 SUPERFAMILY Homeodomain-like 539 605 IPR009057 -
Lan18g1027 768 SMART prehox3 346 486 IPR006563 -
Lan18g1027 768 MobiDBLite consensus disorder prediction 379 417 - -
Lan18g1027 768 Pfam Associated with HOX 351 485 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1027 Lan-Chr18 15296892 15304400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1027 346 605 Homeobox Transcription Factor Family AT2G23760 64.444 4.92e-128 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lan18g1027 POX 2.1e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1027 - - lang:109332370 1427.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0273 17 1887131 1896115 Lan18g1027 18 15296892 15304400 LSH
Lan18g1027 18 15296892 15304400 Lan6g0149 6 1075706 1083544 LSH