Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1017 ATGTCATCATCGAATTCTCCGTGCGCGGCGTGCAAGTTTCTGCGGCGGAAGTGCACGCAAGAATGCGTGTTCGCGCCGTATTTTCCACCGGACAACCCTCAAAGATTCGCGTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCAAAGCTTCTCAACGAACTCAGCGCGGCGCAACGAGACGACGCCGTTAAGTCGCTGGCTTACGAAGCGGAGGCGCGTCTCCGTGACCCCGTATATGGGTGCGTGGGTCTAATCTCCGTTCTTCAACACAGGCTCAAGCAGATCCAAGGTGAGCTCACTAATGCAAAGAAGGAACTCGCTACTTATATTGGACCCCAAGCTCTTCAGGGCATTCCCCCAGCCGCAGTTTTTCAACACCTCCACGCCGCCGCCGCCAACCCTTTTGGCCCCTCCGTGTTTGCTTCCATGCCCTCTACTCACGGTGGCCAAATGGTGATGCGTGACCCCCAGCCTTCACCACAACAGATGTTTGGGGATCCGCAATTGGCTGCAGCTGTAGCTGCAAGAGAGCAACGAGATATGCTTCGGGGTTTTGAGCATCAACAACAACAGCTGCAACAACAGCAGCACCAACAAGAGTTTTTGAGGTTCAATAGTGGTGGGTTCGATTTGGGCACGGTTCCTGATGATGGGTTCTGCCAGCATGTTTCTCCGTCTGCTCCTGTTTCTCAGAACCTCATTGGTTTATCTCCTTCATTGGCTTTGGGGTCTTTTGAGAACCATTTTCATCATATGCAGCAACAACATCAAGGAGAACCTCATGCTAATAATGCTCATGTTCATTCTCATCATATTCCACTTGAGGCTCAGCTACTTCTCACACCTCGGCAGGAAAAACAGGCGCAACAACAAACTCAGCAGCCACAATTGTCACACCATCACCAACAACAACACTTGGATAGGAAGGAGCGTGGTCTACCTTGTTGA 951 0.5195 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLKQIQGELTNAKKELATYIGPQALQGIPPAAVFQHLHAAAANPFGPSVFASMPSTHGGQMVMRDPQPSPQQMFGDPQLAAAVAAREQRDMLRGFEHQQQQLQQQQHQQEFLRFNSGGFDLGTVPDDGFCQHVSPSAPVSQNLIGLSPSLALGSFENHFHHMQQQHQGEPHANNAHVHSHHIPLEAQLLLTPRQEKQAQQQTQQPQLSHHHQQQHLDRKERGLPC* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1017 316 MobiDBLite consensus disorder prediction 302 316 - -
Lan18g1017 316 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 266 - -
Lan18g1017 316 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lan18g1017 316 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lan18g1017 316 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 266 - -
Lan18g1017 316 Coils Coil 176 196 - -
Lan18g1017 316 Coils Coil 86 106 - -
Lan18g1017 316 MobiDBLite consensus disorder prediction 284 301 - -
Lan18g1017 316 MobiDBLite consensus disorder prediction 284 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1017 Lan-Chr18 15223718 15226264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1017 1 236 AS2 family AT5G66870 54.217 3.63e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lan18g1017 LOB 1.6e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0296 17 2064028 2068000 Lan18g1017 18 15223718 15226264 LSH
Lan18g1017 18 15223718 15226264 Lan6g0129 6 924934 926815 LSH