Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1005 ATGGGATATGATAATGATGATGATATGTATCACCACCATCACAAGAACCTTTCAACTTCACAGGGTGATGTCTCTTTTTTTCTGCGTCAGATTCTTCTTCCTTCATCTTCTTCTTCTTCTTCTTCTTCACACTTGCACAACACTAACTCCAACCAATATGACAACAAGATCTTCTCAGCTGAAGCTGGTGGAGCCACTATTTCAAGGGCTACTCACATTTCCATCAAGGGGCAAGAAGGAATCACTGAGAATGACACTGATTCTGAAAGTGAGGACTGCATTGAAGCATCGGCAGAAGAAGTTCCAACAAAGTCAGCTCCTTCTAGGAGTTCATCAAAAAGGAGCAGAGCAGCAGAAGTTCATAATTTATCTGAAAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAATCTAATTCCAAATTCGAACAAGACTGATAAGGCTTCAATGCTCGATGAAGCTATTGATTACCTTAAGCAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGACTAAGTTCGCATCCAATGTGTTTTCCTGAAGGCTTGCAGCCTCTGCAATTGTCTCAGATGAGTATGGAGTTGGGTGAAGAAAACAGGTCTATCCCTTTAAACATGGAAGCTACTCTACCTATGCGCCAAGGGAACCCTGTGAACTATACATCATCTAATTTACCTAACCAACAGACCATGCATAATCATCCATCGGTGCCTTATCCTTCATATATTAACAACTCGGAAGCTTCTTTCGAGCTGGAATCCCCAGTCCTATCACATATAAAACCTCTTCAACCAAGAAGATCTTCGGAGGTAAGCTCAACCATGTCGAATATATGTAGGGAACACATATTGCAGCATCAGCAATCAAATGCAAGCTATTCGGATGCCAATCTATTATCTAGTTCTCAAGTTATCAAAGAATTGGATTCGGGCAAAAATGCGGGATCACTATCCTTTAACATGCAAACAGCTGAAGCTAAGGACAACAGCTCTTTTCAAACATGCTTTGCTGGAAGAGATCAACCAGGAGTGATCCTGAGAAAAAGTGAACCCAACATCATTTGTACATCACAGTTAAGTAGGTAA 1104 0.4112 MGYDNDDDMYHHHHKNLSTSQGDVSFFLRQILLPSSSSSSSSSHLHNTNSNQYDNKIFSAEAGGATISRATHISIKGQEGITENDTDSESEDCIEASAEEVPTKSAPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIDYLKQLQLQVQMLSMRNGLSSHPMCFPEGLQPLQLSQMSMELGEENRSIPLNMEATLPMRQGNPVNYTSSNLPNQQTMHNHPSVPYPSYINNSEASFELESPVLSHIKPLQPRRSSEVSSTMSNICREHILQHQQSNASYSDANLLSSSQVIKELDSGKNAGSLSFNMQTAEAKDNSSFQTCFAGRDQPGVILRKSEPNIICTSQLSR* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1005 367 SMART finulus 122 171 IPR011598 GO:0046983
Lan18g1005 367 PANTHER TRANSCRIPTION FACTOR SPATULA 20 301 - -
Lan18g1005 367 Gene3D - 111 175 IPR036638 GO:0046983
Lan18g1005 367 MobiDBLite consensus disorder prediction 114 128 - -
Lan18g1005 367 Pfam Helix-loop-helix DNA-binding domain 120 166 IPR011598 GO:0046983
Lan18g1005 367 CDD bHLH_AtPIF_like 119 178 - -
Lan18g1005 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 180 IPR036638 GO:0046983
Lan18g1005 367 MobiDBLite consensus disorder prediction 76 128 - -
Lan18g1005 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983
Lan18g1005 367 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 301 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1005 Lan-Chr18 15073059 15076389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1005 84 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 47.321 7.52e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan18g1005 HLH 4.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1005 - - gmx:100793754 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1005 18 15073059 15076389 Lan18g1005 18 15073059 15076389 ECH