Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1000 ATGAACGGTGAAGGTGGTGGTGGTGGTGTTAGAGGAGAGAGAGAAATGGGTACGAGGAAAAAAGGGAAAGAGAGTGGAGAGAGAAGATACAAAGGAATAAGGATGAGAAAGTGGGGAAAATGGGTTGCTGAAATTAGGGAACCTAACAAACGTTCAAGGATTTGGCTTGGTTCTTATTCCACACCCGTTGCAGCGGCGCGTGCATACGACACCGCCGTCTTCTACCTCCGTGGCCCTTCAGCTCGTCTCAACTTCCCTGACCTTCTAACTCGCGAAAACGGTGCCGTTCTTGCTAACTCTGACATGTCGGCGGCTTTTATTAGAAAGAAAGCGACTGAGGTCGGTGCCAGAGTTGATGCACTCCAAGCCACCCACCACCACCGCCATGTTGCGGTGCCTCCGGAGCTTATATCTGACGCCGGCGACAACCGCTCTAGCAAATTCGCGAACCTGGTTGACCTGAATAAAATACCCGAACCCGAGAATTCGGATTATGAATTAGGAGGAAGAGAATGA 516 0.5058 MNGEGGGGGVRGEREMGTRKKGKESGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLTRENGAVLANSDMSAAFIRKKATEVGARVDALQATHHHRHVAVPPELISDAGDNRSSKFANLVDLNKIPEPENSDYELGGRE* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1000 171 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Lan18g1000 171 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Lan18g1000 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 164 - -
Lan18g1000 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 14 164 - -
Lan18g1000 171 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Lan18g1000 171 MobiDBLite consensus disorder prediction 13 29 - -
Lan18g1000 171 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lan18g1000 171 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Lan18g1000 171 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lan18g1000 171 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lan18g1000 171 MobiDBLite consensus disorder prediction 1 29 - -
Lan18g1000 171 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1000 Lan-Chr18 15047343 15048245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1000 7 166 AP2-EREBP Transcription Factor Family AT5G67190 55.376 9.02e-56 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan18g1000 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1000 K09286 - gmx:100527066 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0319 17 2340267 2341020 Lan18g1000 18 15047343 15048245 LSH
Lan18g1000 18 15047343 15048245 Lan6g0114 6 788926 789915 LSH