Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0993 ATGGAACCAGCATCCGCTGACAGTTCATCTCGAGCTACTCCTATTCCTCCGGCTTCTAGTAACCAAAATCAATCAACTGAAGTCTCTGGACAAATTGGTAATGGACATGGCTCACCATCACCGTCACCTGTTTCTGGAATATCATTGTGGGCGAGAAATCTGAAATTTCCACAGTCCTTTGGGCTTGGAGCATCGCAACAGGACTCGCAGACTGAAACTAATGGGATATCAGCTTTGACTCGCCTGACTAGTGGGCTTGGATTAAGAATGCCCTCGAACGAGACTGCTCCAGTCAATTCAGAAGTGGAGCAATCTAATTTAATTGAATCATTCACCAAAGGTTTGGTTGACACTTCCAAGAGTGCAGTAAAGGCAATGCAGGTCAAAGCACGCCATATCGTCTCTCAAAATAAACGTCGATACCAGGAAGATGGATTTGATTTGGATATGACGTATATCACCGAAAACATAATTGCCATGGGATTTCCAGGTGGTGATTTTAGCTCTGGAGTTTTTGGATACATTGAGGGGTTCTATCGCAACCACATGGAAGAAGTGATCAGGTTTTTTGAAACCAATCATAAGGGAAGGTACAAAGTATACAATCTTTGTTCAGAGAGGTTGTATGATGGATCACTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCTCCTATTCAACTTGTAGCATCATTTTGTCAAAGTACGTATTCATGGTTGAAGGGGGATATTCAAAATGTGGTGGTCGTTCATTGTAAAGCAGGCATGGGGAGAACAGGACTGATGATTTGTAGCCTCCTTTTATTTCTTAAGTTCTTCCCAACTGCAGAGGAAGCCATTGATTACTTTAACCAGAAAAGATGTGTAGATGGAAAGGCTCTAGTTCTCCCAAGTCAGATTAGATATGTCAAATACTTTGAACGAACTTTATCACACTTCAATGGAGAAGTTCAGCCTGGGCGAAGGTGCATGCTAAGAGGGTTTAGGCTTCACAATTGCCCTTATTGGGTTAGGCCATCCATTACAATATCCGATCACAGTGGACTTCTTTTCACCACGAGAAAGCATCTCAAGACAAAGGATCTAATGCCAGAAGATTTCTGGATCAGTGCACGGAAGAAAGGAATTGTGGTCTTTGCACTACCAGGAGAGCCTGGCCTGACAGAGTTAGTTGGAGACTTCAAAATTCATTTTCATGAACGACAGGGAGACTTCTACTGTTGGATGAATACAACAATGATAGAAAACCGAACAATTCTGAATGGCTCAGATCTGGATGGTTTTGACAAGAGAAAGATCCCTGCTCCAGGATTCCAGGTCGAAGTTGTGATGGTAGACTATAATGGCATCCTACCTACTAGGACAAAAGCCAATCCCGCCAGCAAAGGATCTGATGGCAGCACAAACAATGATCAAGTCAGGGCAGGTGCAGGGCTTGCATCTAATTCAAGTGATAGCAATAGCAAGGCCCCGAAAAATGGAGATGATGACGTATTCTCAGATAGTGATGATGAGGAGACCCAGGATACACAAAGCAGGAAAGCTGCCAGTGAATACAGATTTGTGGCACCTCATCAAGTGTCTGAGGCCACTAATGACCAGGCAGGGATGTTACATAAGACGGATCAGTTGTCACACCAGCATGAAGAGCGCACGCAAAATAATGCTTCTGTACAATCAACTACAGATAATGAAGTTCATACAGGGCCAAGCGCCACCACGGAGTCGGTAAGGGCAAGTGAATTCAGGACAATTGCAGCAGATGCTTCAGTTTTTTCTTTTGCTGATGAAGATTTTGAAAGTGACTGA 1824 0.4353 MEPASADSSSRATPIPPASSNQNQSTEVSGQIGNGHGSPSPSPVSGISLWARNLKFPQSFGLGASQQDSQTETNGISALTRLTSGLGLRMPSNETAPVNSEVEQSNLIESFTKGLVDTSKSAVKAMQVKARHIVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDFSSGVFGYIEGFYRNHMEEVIRFFETNHKGRYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLVASFCQSTYSWLKGDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYFNQKRCVDGKALVLPSQIRYVKYFERTLSHFNGEVQPGRRCMLRGFRLHNCPYWVRPSITISDHSGLLFTTRKHLKTKDLMPEDFWISARKKGIVVFALPGEPGLTELVGDFKIHFHERQGDFYCWMNTTMIENRTILNGSDLDGFDKRKIPAPGFQVEVVMVDYNGILPTRTKANPASKGSDGSTNNDQVRAGAGLASNSSDSNSKAPKNGDDDVFSDSDDEETQDTQSRKAASEYRFVAPHQVSEATNDQAGMLHKTDQLSHQHEERTQNNASVQSTTDNEVHTGPSATTESVRASEFRTIAADASVFSFADEDFESD* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0993 607 ProSiteProfiles C2 tensin-type domain profile. 325 452 IPR014020 -
Lan18g0993 607 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 395 449 IPR035892 -
Lan18g0993 607 ProSitePatterns Tyrosine specific protein phosphatases active site. 255 265 IPR016130 GO:0016311|GO:0016791
Lan18g0993 607 CDD PTP_PTEN 149 313 IPR045101 GO:0016791
Lan18g0993 607 SMART PTEN_C2_2 323 451 IPR014020 -
Lan18g0993 607 MobiDBLite consensus disorder prediction 547 586 - -
Lan18g0993 607 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 18 607 - -
Lan18g0993 607 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 144 316 IPR029021 -
Lan18g0993 607 Gene3D - 346 453 - -
Lan18g0993 607 MobiDBLite consensus disorder prediction 555 585 - -
Lan18g0993 607 MobiDBLite consensus disorder prediction 459 526 - -
Lan18g0993 607 MobiDBLite consensus disorder prediction 459 494 - -
Lan18g0993 607 ProSiteProfiles Phosphatase tensin-type domain profile. 139 318 IPR029023 -
Lan18g0993 607 Gene3D Protein tyrosine phosphatase superfamily 124 321 IPR029021 -
Lan18g0993 607 MobiDBLite consensus disorder prediction 1 46 - -
Lan18g0993 607 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 246 292 IPR000387 GO:0016311|GO:0016791
Lan18g0993 607 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 18 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0993 Lan-Chr18 14997823 15004085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0993 44 607 Protein tyrosine phosphatase (PTP) family AT3G19420 61.698 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0993 K01110 - gmx:100801622 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0993 18 14997823 15004085 Lan18g0993 18 14997823 15004085 ECH
Lan18g0993 18 14997823 15004085 Lan8g0497 8 7228509 7233742 PCT
Lan18g0993 18 14997823 15004085 Lan4g1486 4 23976086 23981647 PCT