LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan18g0975	ATGAAATTCAATCCAAGAGTTTCTAGCAGCCGCCGCAAGAGCCGCAAGGCTCATTTCACCGCACCGTCGAGCGTGCGCCGTGTCTTGATGAGCGCGCCTCTCTCCGGCGACCTCAGATCCAAGTACAACGTTCGTTCCGTGCCGGTGCGAAAGGAAGACGAGGTGCAAGTGGTGAGGGGAACCTTCAAGGGCAGAGAAGGAAAGGTTGTTCAGGTTTATCGCCGCAAATGGGTTATCCACATTGAACGGATAACCAGAGAGAAGGTAAATGGTTCAACCGTTAACGTTGGGATTCATCCTTCGAAAGTTGTGATTACTAAGCTTCGTTTGGATAAGGATCGTAAGTCATTGCTGGATCGTAAAGCGAAGGGTCGTGCCGCTGCTGATAAGGAAAAGGGTACTAAGTTCGCTCCTGAAGATGTTATGCAAACTGTCGAGTAG	441	0.5034	MKFNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSVPVRKEDEVQVVRGTFKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGIHPSKVVITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFAPEDVMQTVE*	147

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan18g0975	146	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lan18g0975	146	MobiDBLite	consensus disorder prediction	119	137	-	-
	Lan18g0975	146	SMART	kow_9	48	75	IPR005824	-
	Lan18g0975	146	Pfam	Ribosomal proteins L26 eukaryotic, L24P archaeal	8	121	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Lan18g0975	146	ProSitePatterns	Ribosomal protein L24 signature.	52	69	IPR005825	GO:0003735\|GO:0005840\|GO:0006412
	Lan18g0975	146	TIGRFAM	rplX_A_E: ribosomal protein uL24	8	122	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Lan18g0975	146	PANTHER	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	1	146	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Lan18g0975	146	Hamap	50S ribosomal protein L24 [rplX].	9	121	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Lan18g0975	146	CDD	KOW_RPL26	53	105	IPR041988	GO:0003723
	Lan18g0975	146	SUPERFAMILY	Translation proteins SH3-like domain	8	125	IPR008991	-
	Lan18g0975	146	MobiDBLite	consensus disorder prediction	119	146	-	-
	Lan18g0975	146	Pfam	KOW motif	53	82	IPR005824	-
	Lan18g0975	146	Gene3D	-	1	143	IPR014722	-
	Lan18g0975	146	PANTHER	60S RIBOSOMAL PROTEIN L26-1	1	146	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan18g0975	Lan-Chr18	14879911	14880576	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan18g0975	1	146	Cytoplasmic Ribosomal Protein Gene Family	AT3G49910	85.616	3.92e-91	259

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan18g0975	K02898		-	gmx:100788996	240.736

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan18g0975	18	14879911	14880576	Lan18g0975	18	14879911	14880576	ECH
	Lan17g0347	17	2522799	2523490	Lan18g0975	18	14879911	14880576	LSH
	Lan18g0975	18	14879911	14880576	Lan6g0268	6	2057986	2058679	LSH