Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0971 ATGGGTGCTCCAAAGCAGAAATGGACCGCAGAAGAAGAAGCGGCGCTGAAAGCTGGAGTAGGCAAGCATGGTGCAGGAAAATGGCGCACTATACTTACAGACCCAGAATTCAGTTCCATTTTGCGCATGCGTTCTAATGTAGATCTAAAGGACAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAACCTACCGACCCCCAAAATCGACAATAACCACTTCAGCGCTATAGTTCAACATGATGGAGAAGTTGCTGTTATTAAGCCTCTGGCAGTTTCTGGTGGACCATCTCCTAAGTCAAAAGAACAAATATCAAGGTTGGATACTCTTATATTAGAGTCTATTATCAAGTTGAAGGAGCCAAAGGGTTCTGACAGGGCTGCCATTGCTGCTTATATAGAGGATCAATACTGCTCGCCGCCGAACCTAGAAAAGTTACTATCAACAAAATTGAAGCATATGGTGGAAAGTGGCAAATTAATGAAGGTAAAGCGTAAGTACATGATTCCATCAAACCTATCAAGCTCCGAGAAAAGAAGGTGCTCTTCCTCCTTACTCCTTGAATGGAGGTCCAAAGATTCTCCTAAAACAGAGAAGACTGGTGTCAACAACCTTTCAAAATCCCAAATTGATGTAGAGCTATCAAAAATTAAGGGCATGACAGCTCAAGAAGTGGCAGCTGCGGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCCGAGGCAGAGGCAGCAGCTAGGGTGGCAGAGGCAGCAGAAGCTGAAGCAGAGGCTGCACAAGTTTTTGCAAAGGCAGTAAAGAGAGCATTTAAATGCAAAAAACGTTCTCCTTGA 873 0.4456 MGAPKQKWTAEEEAALKAGVGKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPTPKIDNNHFSAIVQHDGEVAVIKPLAVSGGPSPKSKEQISRLDTLILESIIKLKEPKGSDRAAIAAYIEDQYCSPPNLEKLLSTKLKHMVESGKLMKVKRKYMIPSNLSSSEKRRCSSSLLLEWRSKDSPKTEKTGVNNLSKSQIDVELSKIKGMTAQEVAAAAAKAVAEAEAAIAEAEAAARVAEAAEAEAEAAQVFAKAVKRAFKCKKRSP* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0971 290 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lan18g0971 290 SMART h15plus2 113 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan18g0971 290 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lan18g0971 290 SMART sant 4 59 IPR001005 -
Lan18g0971 290 PANTHER MYB TRANSCRIPTION FACTOR 1 286 - -
Lan18g0971 290 CDD SANT_TRF 6 57 - -
Lan18g0971 290 Pfam linker histone H1 and H5 family 120 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan18g0971 290 Gene3D - 2 59 - -
Lan18g0971 290 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Lan18g0971 290 PANTHER SINGLE MYB HISTONE 4 1 286 IPR044597 GO:0003691
Lan18g0971 290 Coils Coil 238 272 - -
Lan18g0971 290 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan18g0971 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lan18g0971 290 Gene3D - 111 192 IPR036388 -
Lan18g0971 290 SUPERFAMILY "Winged helix" DNA-binding domain 114 192 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0971 Lan-Chr18 14857174 14861827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0971 1 289 Single Myb Histone (SMH) Gene Family AT5G67580 55.405 2.81e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan18g0971 Linker_histone 3.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0971 K09422 - gmx:778165 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0352 17 2547617 2553003 Lan18g0971 18 14857174 14861827 LSH