Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0960 ATGGGTCATCATCAAAATCCCACTAACTCAGTTCTTCATCTTGGTCTAGGGTTATCCTTGACTACTACAGATGAAACCACCATGGTTGATGATCATCTTTGTCTTCATAAGCCCACGCCAATGAAGCCTTATTTCTCAAGTTTCATCACCGATACTGAGCCATCTTTAACGTTGGGTCTCTCAAATACTGAAAGTTACCCGAACCAGCATGTGGCTAAGAACAAAATAGATGGGAAATACAAAACATGTGGTGATGAGGACCCTGTTGAGTTGTCGGCTTCAGCTCACAGCGTTGCTTCATCTTTCTCCGGTGGGAGGGTGGTGAAGAGAGAGAGGGATCTTAGCTTTGAAGAGGTAGAGACAGAGGCAATAGAGAGGGTTTCTTCAAGAGTGAGTGATGAAGATGAAGATGGCACTAATGCTAGAAAGAAGCTTAGGCTTACTAAACAACAATCTATGTTGCTCGAAGAGAGTTTCAAACAACATAGCACTCTCAATCCTAAACAGAAGCAAGCCTTAGCCAGACAACTAAGTCTAAGGCCTCGACAGGTTGAAGTGTGGTTCCAAAATCGTAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGATTGCGAGTTCTTAAAGAAATGCTGTGAAACATTAACAGATGAGAACAAGCGTCTAAAGAAGGAGTTGCAGACACTGAAACAGTCTCAACCCATGTACATGCCTATGCCTGCAGCCACACTCTCTATGTGCCCTTCTTGTGAGAGAATCGTTGGAGATGGTGGTTCAAAGAAGAGCCCTTTCTCCATGGCTCCCAAGCCTCACTTCTATAATCCATTCACCAATTATTCTGCAGCATGTTGA 849 0.4405 MGHHQNPTNSVLHLGLGLSLTTTDETTMVDDHLCLHKPTPMKPYFSSFITDTEPSLTLGLSNTESYPNQHVAKNKIDGKYKTCGDEDPVELSASAHSVASSFSGGRVVKRERDLSFEEVETEAIERVSSRVSDEDEDGTNARKKLRLTKQQSMLLEESFKQHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENKRLKKELQTLKQSQPMYMPMPAATLSMCPSCERIVGDGGSKKSPFSMAPKPHFYNPFTNYSAAC* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0960 282 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677
Lan18g0960 282 SUPERFAMILY Homeodomain-like 132 199 IPR009057 -
Lan18g0960 282 CDD homeodomain 142 199 IPR001356 GO:0003677
Lan18g0960 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 12 282 - -
Lan18g0960 282 Pfam Homeobox associated leucine zipper 198 230 IPR003106 GO:0006355|GO:0043565
Lan18g0960 282 PANTHER - 12 282 - -
Lan18g0960 282 SMART HOX_1 140 202 IPR001356 GO:0003677
Lan18g0960 282 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981|GO:0006355
Lan18g0960 282 SMART halz 198 238 IPR003106 GO:0006355|GO:0043565
Lan18g0960 282 Gene3D - 135 203 - -
Lan18g0960 282 Coils Coil 204 231 - -
Lan18g0960 282 Pfam Homeodomain 142 196 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0960 Lan-Chr18 14764695 14766314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0960 9 282 Homeobox Transcription Factor Family AT4G37790 57.143 8.95e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan18g0960 Homeodomain 8.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0960 K09338 - gmx:100795135 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0960 18 14764695 14766314 Lan6g0289 6 2216273 2218042 LSH
Lan18g0960 18 14764695 14766314 Lan6g0913 6 8515355 8517320 PCT
Lan18g0960 18 14764695 14766314 Lan17g1001 17 14606649 14609407 PCT
Lan6g0913 6 8515355 8517320 Lan18g0960 18 14764695 14766314 PCT
Lan17g1001 17 14606649 14609407 Lan18g0960 18 14764695 14766314 PCT