Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0948 ATGGATTCTCGACAACAACCCCCTCACCACTCTAACCTCATGGTGGGACCCACTTCCTACCCCCCAAACACCACCATACCCTCCACCATGCCCACCGCCACATTCCCTTTCTCCTCTATGCCCCACCACCACCACCACCACTCAACTGCTCCTTCCAACAATAACAACCCTCCTTCTCCCGAGCCCCTCAACAACAACAACAACAACAACAGTGTCGCTCCATATGAGGACGGTTCCTCTTCGGCATTGAAGCCGTTCGGGTTAACCGCCACTGACTCCGGCAAGAAGAAGAGGGGCCGGCCAAGGAAATACTCACCTAATGCTGGTAACATTGCTTTGGCTTTGGCTCCCTCCACAGATCAGCACGTGTCTTCTCCTCCTCCTCACGGTGGCGGCGCCACGCCGTCGACCAAGACTCTGGCCAAGAAGCATAGGGGAAGGCCACCTGGCTCCGGAAAGAAGCAGCTCGACGCGCTTGGAGCTGGTGGTACTGGTTTTACTCCTCATGTAATTTTGGTGGAGCCTGGTGAGGACATTGCAGCAAAATTTGTGGAATTTTCTCAACAAGGACCTCGGACAGTTTGCATCCTTTCTGCTCGTGGTGCAATCAGCAATGTCACCCTTCGACAGCCAACAACATCTGGGAGTACTGTCACGCATGAGGGCCTATATGAAATTATTTCTCTCTCAGGTTCGACACCGCTATCTGAAAAGAGTAGTAGTGGTTATGGCAAAACGGATGGCTTGAGTGTGTCCCTTGCAGGACCTGATGGACGAGTTTTGGGTGGCTTAGTTGCTGGAATGCTCAAGGCAGCATCACAAGTACAGGTCATTGTGGGTAGCTTCATTGCTGAGCACAAAAAGTCTAGCTCAAACAACCTGAAATCTGGTCCTCCAGTGCCATCACCCCAAATGTTATCTTTTGGTGTGCCTGCAACTCCAACCAGTCCTACTTCTCAAGGGCCTTCATCCGATTCCTCCGATGACAATGATAATGGTCCTTCTAATAAGGGACCTGGTCTCTACAATAATGCTACTCAGCCCGTTCATAATATGCCGCCGTACCATCACCGGTTATGGGCTGGCCAAACTCAGCAGTGA 1101 0.5177 MDSRQQPPHHSNLMVGPTSYPPNTTIPSTMPTATFPFSSMPHHHHHHSTAPSNNNNPPSPEPLNNNNNNNSVAPYEDGSSSALKPFGLTATDSGKKKRGRPRKYSPNAGNIALALAPSTDQHVSSPPPHGGGATPSTKTLAKKHRGRPPGSGKKQLDALGAGGTGFTPHVILVEPGEDIAAKFVEFSQQGPRTVCILSARGAISNVTLRQPTTSGSTVTHEGLYEIISLSGSTPLSEKSSSGYGKTDGLSVSLAGPDGRVLGGLVAGMLKAASQVQVIVGSFIAEHKKSSSNNLKSGPPVPSPQMLSFGVPATPTSPTSQGPSSDSSDDNDNGPSNKGPGLYNNATQPVHNMPPYHHRLWAGQTQQ* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0948 366 Gene3D - 168 296 - -
Lan18g0948 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 16 361 IPR039605 GO:0003680
Lan18g0948 366 CDD DUF296 167 282 IPR005175 -
Lan18g0948 366 MobiDBLite consensus disorder prediction 1 36 - -
Lan18g0948 366 MobiDBLite consensus disorder prediction 50 77 - -
Lan18g0948 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 286 - -
Lan18g0948 366 MobiDBLite consensus disorder prediction 1 160 - -
Lan18g0948 366 MobiDBLite consensus disorder prediction 308 350 - -
Lan18g0948 366 ProSiteProfiles PPC domain profile profile. 163 304 IPR005175 -
Lan18g0948 366 MobiDBLite consensus disorder prediction 289 366 - -
Lan18g0948 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 16 361 - -
Lan18g0948 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 168 282 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0948 Lan-Chr18 14698119 14703414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0948 95 366 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 45.806 7.12e-63 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0948 - - lang:109331997 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0371 17 2747777 2752305 Lan18g0948 18 14698119 14703414 LSH
Lan18g0948 18 14698119 14703414 Lan6g0303 6 2316984 2321515 LSH
Lan18g0948 18 14698119 14703414 Lan6g0920 6 8596219 8599116 PCT
Lan6g0920 6 8596219 8599116 Lan18g0948 18 14698119 14703414 PCT