Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0946 ATGCCAGTTCCACTAGCCCCTTACCCTACAAACCCAGCTCCATATTCACCTCCAGTAAATGGTGGTCAGAGTCAACTTGTCTGTTCTGGCTGTAGAAGCCTTCTGATGTATCCAGTTGGAGCCACCTCTGTGTGTTGTGCTGTTTGCAATGCAGTCACAACAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTACTCATGTACATTCGCGGCGCGACAAGTGTCCAGTGCTCTTGTTGTCACACAATCAATTTAGCTTTAGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGTAACATGCTACTCATGTACCAATATGGAGCAAGATCTGTGAAATGTGCAGTTTGCACTTTTGTAACATCAGTTGGGGCCTCAGCAAGCATCATTGAACAGAAACTTAGCACCTAA 438 0.468 MPVPLAPYPTNPAPYSPPVNGGQSQLVCSGCRSLLMYPVGATSVCCAVCNAVTTVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTINLALEANQVAHVNCGNCNMLLMYQYGARSVKCAVCTFVTSVGASASIIEQKLST* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0946 145 SUPERFAMILY Multiheme cytochromes 42 126 IPR036280 -
Lan18g0946 145 PANTHER PROTEIN LOL1 1 141 - -
Lan18g0946 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
Lan18g0946 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Lan18g0946 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Lan18g0946 145 PANTHER PROTEIN LSD1 1 141 IPR040319 -
Lan18g0946 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Lan18g0946 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Lan18g0946 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 102 131 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0946 Lan-Chr18 14687798 14690109 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lan18g0946 zf-LSD1 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0946 - - tcc:18606063 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0373 17 2766687 2768989 Lan18g0946 18 14687798 14690109 LSH
Lan18g0946 18 14687798 14690109 Lan6g0923 6 8616570 8619151 PCT
Lan18g0946 18 14687798 14690109 Lan17g0991 17 14189816 14192270 PCT
Lan6g0923 6 8616570 8619151 Lan18g0946 18 14687798 14690109 PCT
Lan17g0991 17 14189816 14192270 Lan18g0946 18 14687798 14690109 PCT