Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0942 ATGTTTCCCACTTTGTTTCTTTTCTGGGTTCATTTTTTGTACACCTTTGTTGTCAAATTCGTCTTTGCTTTTTCCTCTTTGCAAGATCTTACTTGGATCTTTTTCTCTTTCCTTTTCTATGATCAGATTTCAGTTTACAATACAAAGGGGCTGAGAGAGGATGCAAAACCAGCTATGGTTTGCACTGCCAATGATATACAGGAATGGAAAGATTTTCCAAAGGGACTTAAGGTTCTTCTCCTTGATGGAGATAGCAGTTCTGCTGCTGAGACAAAATCAAAACTTGAGGCTATGGACTATAATGTTTATGCCTTTGACGACGAAAATGCAGCTTTATCAGCAATCTCAAGTTGGTCTGAAAACTTCCACATTGCCATAGTGGAGATGATTGTGAGTACAAGCAGTAGCCAGGGAGGTTTCAAGTTTCTTCAGAATGCCAAGGACTTGCCAACCATCATGACTTCAAACAATCAGTGCCTGAGCACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTCCAAAATAAACCACTCTCGGAGGATAAGCTCGGAAATATCTGGCAGCATGTGGTTCATAAGGCATTCAGTGCTAGGGAAAGTGTCTTGCCCGATTCACTAAAACCTGTCAAAAAATCTGTAGAATCCATGTTGCAGCCCCAAACAGAAAATGGACAACATGAAAATAAAATCTCGGTAGAATTAGATAATGTGTCCATGTTAAGCGATGATGACCATGATCACTCTGCTGGAAGTGATAAATATCCAGCTCCTTCAACCCCACAATTAAAACAAGGAGAAAGATTACTGGACGATGGCGATTGCCAAGATCAGAGTAATTGCTTCACAGAAAAAGAAAGCGGGGAGCATGATGGAGACTCTAAATCTGTCGATACTTCATGCGAGAATTTGAACACTGAAGGTACTGCACAAACAGGAAAACCTGCAAAGGCTCTAATTAAGGGGGAAGAGGATTTTGCTGATTGCTGCAAGGGGGAGAGTACGATTTCTCCGAATCAGCGTCATAGAAAGTTTCTCAGCAAGGCAGGTGGCATTACTACATCTCCAAATAAAGCAGGTGTTCCTAGAGATTCTCGCGAAATTAAAGCTAATCGGAAGAAGATGAAAGTGAGCTGCAGTACTAGTATTAGTTATTATCATTTTATTCACTATGTAGACTGGACGCCCGAGCTGCACAAAAAATTTGTGCAGGCAGTGGAACAGCTAGGCGTTGATCAAGCCATTCCCTCTAGAATATTGGAGCTAATGAAAGTGGAGGGCTTGACAAGACATAACGTGGCAAGCCATCTTCAGAAATATAGAATACAGAAGAGACCAACCCTTCCCAGAGAAGAAAATCGAAGATGGACAAATCAAAAGGATTCTATACAAAGGAACTACTATGTGCAAAGACCAATTATGGCTTATCCTCCATATCATCCCAACCACACCATTTCTCCAGTTCCTGTATATCCTATGTGGGGACAACCTGGCAGCCAAACAGATGGTGTGCAGGTTTGGGGTCCTCCTGGTTATCCGATGTGGCAGCCTTCAGAAAGTTGGCATTGGAAGCCTTTTCCAGGGGTGCATGCGGATGCATGGGGTTGCCCGGTGATGCCACCTCCACAAGCTCCTTGTTTTCCCTACACTCAAAACATGGCAGGATTGCACAATGCCAAAGCAGTGGATTATAGATTTGGCATGCCACAAACTTCCTTTGAGCATCATACCGCAGAGGAGGTTGTTGATAAGGTTGTGAAAGAGGCAATGAGCAAACCATGGCTACCCTTGCCTATAGGCCTCAAACCGCCTTCGGCGGATAGTGTGTTGGCTGAGCTCTCTAAGCAAGCATGTCCAGCATCCCTCTTGTTGACAAAGGTGTTAAACCGCACTCCTGTGTACAAAGATAACTAG 1914 0.4352 MFPTLFLFWVHFLYTFVVKFVFAFSSLQDLTWIFFSFLFYDQISVYNTKGLREDAKPAMVCTANDIQEWKDFPKGLKVLLLDGDSSSAAETKSKLEAMDYNVYAFDDENAALSAISSWSENFHIAIVEMIVSTSSSQGGFKFLQNAKDLPTIMTSNNQCLSTMMKCIALGAVEFQNKPLSEDKLGNIWQHVVHKAFSARESVLPDSLKPVKKSVESMLQPQTENGQHENKISVELDNVSMLSDDDHDHSAGSDKYPAPSTPQLKQGERLLDDGDCQDQSNCFTEKESGEHDGDSKSVDTSCENLNTEGTAQTGKPAKALIKGEEDFADCCKGESTISPNQRHRKFLSKAGGITTSPNKAGVPRDSREIKANRKKMKVSCSTSISYYHFIHYVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRIQKRPTLPREENRRWTNQKDSIQRNYYVQRPIMAYPPYHPNHTISPVPVYPMWGQPGSQTDGVQVWGPPGYPMWQPSESWHWKPFPGVHADAWGCPVMPPPQAPCFPYTQNMAGLHNAKAVDYRFGMPQTSFEHHTAEEVVDKVVKEAMSKPWLPLPIGLKPPSADSVLAELSKQACPASLLLTKVLNRTPVYKDN* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0942 637 MobiDBLite consensus disorder prediction 298 312 - -
Lan18g0942 637 Gene3D - 76 202 - -
Lan18g0942 637 Pfam Myb-like DNA-binding domain 393 441 IPR001005 -
Lan18g0942 637 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 394 445 IPR017930 -
Lan18g0942 637 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 392 443 IPR006447 GO:0003677
Lan18g0942 637 ProSiteProfiles Response regulatory domain profile. 77 192 IPR001789 GO:0000160
Lan18g0942 637 MobiDBLite consensus disorder prediction 283 297 - -
Lan18g0942 637 MobiDBLite consensus disorder prediction 241 315 - -
Lan18g0942 637 Gene3D - 390 446 - -
Lan18g0942 637 PANTHER TRANSCRIPTION ACTIVATOR GLK1 59 620 IPR044825 GO:0003700|GO:0045893
Lan18g0942 637 SUPERFAMILY CheY-like 74 200 IPR011006 -
Lan18g0942 637 SUPERFAMILY Homeodomain-like 392 445 IPR009057 -
Lan18g0942 637 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 59 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0942 Lan-Chr18 14657040 14663483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0942 59 630 Response Regulator Gene Family AT4G18020 46.341 1.41e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan18g0942 Myb_DNA-binding 7.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0942 - - gmx:100784905 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0380 17 2827162 2836723 Lan18g0942 18 14657040 14663483 LSH
Lan18g0942 18 14657040 14663483 Lan6g0311 6 2385255 2391660 LSH
Lan18g0942 18 14657040 14663483 Lan6g0932 6 8712044 8733097 PCT
Lan6g0932 6 8712044 8733097 Lan18g0942 18 14657040 14663483 PCT