Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0937 ATGGCTCTCTATCTTTTGTGTCTTGTGCTTTCTACCACCTTGGTTTTCAATTTCTTGCAAACACTAGCTGATACTTCATGCACAGATTGTTTTATTCAGTCTCGGGCAACATATTACCCAAATTCTGAAGATAATGGAACAGATGTAGGTGCATGTGGATTTGGTTCCTTTGGTGCTACACTAAATGGTGGGGATGTTTCAGCTGCATCTAATCTTTATAGAGATGGTGTTGGATGTGGTGCTTGTTATCAGGTGAGGTGTACCAATAGTGCCTTTTGCTCAGACAAGGGTTCCACTGTTGTTATAACAGACCAAGGCTCAAGTGATAACACTGATTTCATTCTTAGCCAACGTGCCTTTGGTAGGATGGCTCAAACCACTGATGCAGCTGCTTCTCTATTAGCCCTTGGAGTGGTTGGTATTGAATATAGAAGAGTTGCATGCAGCTACCCAAACAAAAACATAACATTCAAAATAGATGAGAGCAGTGGCAACCCTCATTACTTGGCTTTTGTCATAAGGTATCAACAAGGAAGGAGAGACATAACAGCAGTGCAGCTGTGTGAGACTCAGAACTTTGTCTGCAAGTTACTGGATCGGAGTCATGGAGCAGTGTGGACTACAACATCTGCGCCGAGTGGACCTTTGTCTGTAAGGATGTTGTTTAGTGATGAAGAAGGAGGAGAAGAAACATGGGTTGTTCCTGTTAATGACATACCCCAAGATTGGAAGGCTGGAGATATATATGATTCAGGGGTACAAGTGAACCAATAA 774 0.4251 MALYLLCLVLSTTLVFNFLQTLADTSCTDCFIQSRATYYPNSEDNGTDVGACGFGSFGATLNGGDVSAASNLYRDGVGCGACYQVRCTNSAFCSDKGSTVVITDQGSSDNTDFILSQRAFGRMAQTTDAAASLLALGVVGIEYRRVACSYPNKNITFKIDESSGNPHYLAFVIRYQQGRRDITAVQLCETQNFVCKLLDRSHGAVWTTTSAPSGPLSVRMLFSDEEGGEETWVVPVNDIPQDWKAGDIYDSGVQVNQ* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0937 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 251 IPR007117 -
Lan18g0937 257 PANTHER EXPANSIN-B3 7 256 - -
Lan18g0937 257 Pfam Expansin C-terminal domain 155 230 IPR007117 -
Lan18g0937 257 Pfam Lytic transglycolase 69 139 IPR009009 -
Lan18g0937 257 SUPERFAMILY PHL pollen allergen 153 251 IPR036749 -
Lan18g0937 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Lan18g0937 257 Gene3D - 20 148 IPR036908 -
Lan18g0937 257 SUPERFAMILY Barwin-like endoglucanases 23 152 IPR036908 -
Lan18g0937 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Lan18g0937 257 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Lan18g0937 257 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Lan18g0937 257 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Lan18g0937 257 Gene3D - 149 252 IPR036749 -
Lan18g0937 257 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 7 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0937 Lan-Chr18 14630735 14632916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0937 11 253 Expansin Gene Family AT4G17030 41.700 2.44e-59 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0937 - - gmx:100794009 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0937 18 14630735 14632916 Lan17g0984 17 13927893 13929726 PCT
Lan17g0984 17 13927893 13929726 Lan18g0937 18 14630735 14632916 PCT