Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0930 ATGCATTGTGTTTCAGCTAGAACTCGTTCTAAACGAGCCCTAAATGATAATCTCCTTTTGAAGCAGAGCACTAAAATCAACAACAACCCTGTTTCTGATTTTGAGGTTGTTGGGCTCAGTTCTGATGATGATGATGATAATGCTGATGAAGAATGTGAAACCATTGTTGATTTTGTAGAAGATGAAGAAGAGTTCATTGAAAGTAGTGATTTTGATTTTAATGCAATGGAGAATGAGCATGATGATGTTTTGGTTGTGTCAGATTTTGAGAAAGAGGATGATGAGGTGAAAATTGCAATGGAGGCTAAGAGGGGAAGACCAAAAGGAAAAAAGGGTGAGAATGATGTTGGAGGAATAAGGAGGAGGAAAATTTATGGGCTTGATATTTTGATTGATGAGAATAATAGTGAAGAGAAAAAGTGTGCAGCACAAAGAACCCGTTCTCATTTTTGTTCTAACAATAAGAAGAAAAACAAGTTGAAGTTGGGGACTATTGCTCAACCAATATGCATTGATGATGATGATGATGATGAGAATGAGGAAGAGAATGAAGGTGATTTTGATGATATCACTCTAGAGGAGGAAACAAATGTTTCAGTATCTGATGATGAAGAAGTAAGTGGGTCTGAATCTGATGAACAATACTCTAGTGGTTCCAAGAGAAAAGGCCATGCATGTGTGAACAACAATGGGAAAAAGCACAAAGAGCAAGGTTTTCACATTCTTGAGATTTTGAAGGATTCTATTTATGGAAAAGAGAAGGTTGTTTTGAAGGCAAGAGATGAGGAACCAAACCCTTGTACTCATTTGCCAATTAAGTTTTCTATTTTACATGAGGGTCCAAAAGAAGCAGAGAAATCAGAAGAAGAAGAAGAAGAATTAGAACCTATTTGGGCTGAGATGGAGCGTGGTCTTTATGATACTCCGGATTCTTGTGTTAGTGATCACATGAGGGAATCCTCTGCACTACCAAATAGGAAACATATCTCATCCAAGTTTACTTTTTTGCATAAGGATCCAAAAGAAAAAGAGAATTCGGAAGATGGTAAAGAATTAGAACCAATTTGGGCTGAGATGGAGCGTGGTTGTCTTGATGATACTCCTAAGTCTTGTGTTACTGATCACAAGAGGGAAGCTTCTGCACTCCCAAAGAAGAAACAAGTCTCGAGCGCGTCTTCATTTTTACATAAGGATCTAAAAGCAACAAGGAAATCAGAAGAAGAAAATGGATTAGAGCCAATTTGGGCTGAGATGGAATGTGGTCTTAATGATACTCCTGATTCTTGGGTTAGTGGTCACAAGAGAGAAGCCTCTGTATGCTCAAGGAAGAAACATGTTCGTGGCGATCCAAAAGATATTGCTGTGCTTAATAAGAATGTTCTTCAGGATTATATCTATGGTGAGGGAGAAGTGCTTACGGAGGAGCCAATAAAAAATGAACTTAATCCAATCAATGATCTGCTGCCTGTGTTTCCTTTTATGTGTGTCGAACCAACACCACCGGAGAAATCAGATGAAGAGAAAGAATTAGATGTACTCTGGGCCCAATTGGACCTTGCTCTTTACTCGGCGCAGGAAAACTCTACTCCCGTTTCTCAGGTTCAAAATGATATTGATTCCGGTGACGATCAATGTCCAAACGGTGAAGTTAGCAAAGCTACTCTTTGTCGTCAAGGGAAGCATCATCTTCGGCTTAATGAGGAAATTGGACTTGTATGCATATACTGCTTACATGTCGGATTGGATATCAAGGATCATCTACCTCCCTTTAGTGAAAATCCATTTGGAAAGTCAAACAGGAGAGACTTTTACTTTGAGGACCATGCACACCACTCTGTCTTTAATGATTTTCAGGATCGAGTTACTGGATATGATGATGATAACATCTGTGACTATACCGGGACAGTGTGGACTATGATTCCAGGAGTGAAGAAGAATATGTATCCTCATCAGTGTGAAGCTTTTGAGTTTCTTTGGAAGAATTTAGCTGGAGGGATTTTTCTTGATCAGTTGAAAGAACAAGAAGATTTTCATGGTGGTGGTGGATGCATTATATCTCATGCTCCTGGGACCGGGAAAACCCGTCTGACTATTACGTTTCTCCAGACATACATGAAGTTATATCCAAAATGCAGATCAGTGATTATTGCTCCTAAAGGCATGCTTCTTACATGGGAAGAGGAGTTTAGAAAATGGAATGTTGACATTCCATTTCATAATTTGAACAGTCCTGACTACTCTGGCAAGGAGAGTAAGGTAGCTATGAATCTCGCGACGGATTCTGATTGTAACGTTTCAAGCCGTTTAGTGAAGTTATATTCCTGGAAGTGTACTAAAAGCATATTGGGAATTAGCTACAAATTGTTTGAGCAACTTACTCGGCAGGACTGCCGTGATAAGGAGTTAAGAAAGTTCCTTCTTGAACATCCTGGCTTATTAGTTCTTGACGAAGGACACACTCCCCGAAATTCTCGAAGTCTTATATGGAAAGCTGTCTCACAATTCAGGACAAAAAAGCGCATCATCCTCTCTGGAACTCCCTTTCAGAATAATTTTAAGGAGTTGCGCAACACACTCTGCTTGGCAAGGCCTAAGTTTGCTGATTGGAATCCATCCGGAGGCAAAGGCATATTCAACGAGAAGCTAGGGCATCCAAGAAAGGAATATGTCGGGAAATGGAAGAATCTGACCAAATCATTCGGCAAGGTTACTGATGATAGAAAACTCAAGATAGCGAAAGAGGTCAGAAACATGATTCGTTCTTTTGTTCATGTACACAAGGGAACAATACTGCAAGAGAGTCTTCCCGGGATGAAGGAGTTTGTAGTTATATTAAAGCCAACCCAGTTGCAGAAAGAACTTATTGAGGATATTCAGAGAAAAAGGAACAGACTCTGCCATGGAAACCAGGCACCCTTGAATGTGATGAAAATAGAATATGAGGAGTCCGTAACTGCTGTTCATCCTGCACTGTTCGATTCATCTGAAGGCAAGGGGAAGTTTGAAAGACTTAAATTGAATCCGGAGGAAAGTTCCAAAACAAATTTTTTAATGGAACTCATCAGGCTCAGTGAGCTTGTGAATGAAAAGGTCTTGGTTTTCTGCCAATTTATATCACCCTTGAAGCTTATGGCAAGCCAGCTTAAACATCATTTTAGTTGGACAGAAGGACGAGAGGTGTTACATATGCATGGACAAGTCGATGCGAAATTGCGTCAAGCTTCAATTAAATCTTTCAACAATCCTAACAGCAACGTAAGGGTAATGCTAGCATCAACCAAGGCTTGTTATGAAGGTATCAGTTTAGTTGGTGCGTCGAGGGTTGTTTTACTGGACGTCGTATGGAATCCTTCAGTGGAGAGGCAAGCTATAAGCCGTGCTTATCGACTCGGGCAGAAGAAATATGTGTACACTTACCATCTGATTACAGCAGGAACAATGGAGGAAGAAAAACGGAGTCGTCAAGCTGAGAAAGATCAGTTGTCAGAGTTGATGTTCTTTAATTCTGACGGGGCTAAGCATCCTGAAAAAAAATCATCTTCCGAATTTGATGATCAAATTTTAGAAGAGATGGTCCAACAAGAAAAATTTAGACATGTATTTGAAAAAGTAGCCATTAAGAAACAGACACTATTTTGA 3639 0.3979 MHCVSARTRSKRALNDNLLLKQSTKINNNPVSDFEVVGLSSDDDDDNADEECETIVDFVEDEEEFIESSDFDFNAMENEHDDVLVVSDFEKEDDEVKIAMEAKRGRPKGKKGENDVGGIRRRKIYGLDILIDENNSEEKKCAAQRTRSHFCSNNKKKNKLKLGTIAQPICIDDDDDDENEEENEGDFDDITLEEETNVSVSDDEEVSGSESDEQYSSGSKRKGHACVNNNGKKHKEQGFHILEILKDSIYGKEKVVLKARDEEPNPCTHLPIKFSILHEGPKEAEKSEEEEEELEPIWAEMERGLYDTPDSCVSDHMRESSALPNRKHISSKFTFLHKDPKEKENSEDGKELEPIWAEMERGCLDDTPKSCVTDHKREASALPKKKQVSSASSFLHKDLKATRKSEEENGLEPIWAEMECGLNDTPDSWVSGHKREASVCSRKKHVRGDPKDIAVLNKNVLQDYIYGEGEVLTEEPIKNELNPINDLLPVFPFMCVEPTPPEKSDEEKELDVLWAQLDLALYSAQENSTPVSQVQNDIDSGDDQCPNGEVSKATLCRQGKHHLRLNEEIGLVCIYCLHVGLDIKDHLPPFSENPFGKSNRRDFYFEDHAHHSVFNDFQDRVTGYDDDNICDYTGTVWTMIPGVKKNMYPHQCEAFEFLWKNLAGGIFLDQLKEQEDFHGGGGCIISHAPGTGKTRLTITFLQTYMKLYPKCRSVIIAPKGMLLTWEEEFRKWNVDIPFHNLNSPDYSGKESKVAMNLATDSDCNVSSRLVKLYSWKCTKSILGISYKLFEQLTRQDCRDKELRKFLLEHPGLLVLDEGHTPRNSRSLIWKAVSQFRTKKRIILSGTPFQNNFKELRNTLCLARPKFADWNPSGGKGIFNEKLGHPRKEYVGKWKNLTKSFGKVTDDRKLKIAKEVRNMIRSFVHVHKGTILQESLPGMKEFVVILKPTQLQKELIEDIQRKRNRLCHGNQAPLNVMKIEYEESVTAVHPALFDSSEGKGKFERLKLNPEESSKTNFLMELIRLSELVNEKVLVFCQFISPLKLMASQLKHHFSWTEGREVLHMHGQVDAKLRQASIKSFNNPNSNVRVMLASTKACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKYVYTYHLITAGTMEEEKRSRQAEKDQLSELMFFNSDGAKHPEKKSSSEFDDQILEEMVQQEKFRHVFEKVAIKKQTLF* 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0930 1212 SMART ultradead3 643 878 IPR014001 -
Lan18g0930 1212 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 478 1207 - -
Lan18g0930 1212 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 674 865 IPR014001 -
Lan18g0930 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 867 IPR027417 -
Lan18g0930 1212 Pfam SNF2-related domain 677 962 IPR000330 GO:0005524|GO:0140658
Lan18g0930 1212 SMART helicmild6 1042 1131 IPR001650 -
Lan18g0930 1212 Gene3D - 936 1210 IPR027417 -
Lan18g0930 1212 MobiDBLite consensus disorder prediction 171 232 - -
Lan18g0930 1212 Pfam Helicase conserved C-terminal domain 1013 1131 IPR001650 -
Lan18g0930 1212 MobiDBLite consensus disorder prediction 171 210 - -
Lan18g0930 1212 CDD SF2_C_SNF 1011 1142 - -
Lan18g0930 1212 Gene3D - 629 892 IPR038718 -
Lan18g0930 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 928 1166 IPR027417 -
Lan18g0930 1212 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1019 1180 IPR001650 -
Lan18g0930 1212 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 478 1207 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0930 Lan-Chr18 14527669 14533380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0930 1028 1166 RAD5 or RAD16-like Gene Family AT5G05130 38.571 3.28e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan18g0930 SNF2_N 2.4e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0930 K10875 - vvi:100267731 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0930 18 14527669 14533380 Lan18g0930 18 14527669 14533380 ECH