Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0925 ATGACAGCATCAGGCAATATTGGTCGTTCTGAAGAATTATCTGGGAAGCGATCAATGGAAAATGGGGACTGCACTTCTCTTAGTCGGTCCATGTATAAGCGGCGTAAGGTTTCTGCCATTCGTGATTTCCCAGAGGGATGTGGACCGCTGGCTTCAAGTGTTGTTCCAGTGTTAGAGGTAGATATTGCTGATATTAGTTCCGCTAATGGTACAAGTGTTGAGGATAAGAATGGTGAACATTCAGGGGATGATACTGTTAGAATGTCCAACTGTAAAGCTGATTCTCAGCATTCTGAGTTCAAAAAAGATTTGCTTCTTACCGAGTCTCTTCGCCAAACAATTGATTGTAGTTTGAAGAATGAAAATCTAGTAGTCGCATCTCATCATGTAGATGAGCTTAGTTTGGCAAATGATGATTCTGCAGAAGAGCCAATGGTGGGCATGGAAGCTTTGAAGGATACAGAGTTGACTCTTGGCCAAACAACTGACTGTAGTCTGAAGAACGAAAATCCAGTGATCTCATCTCATTATATGAGTGGTCTTCCTTTGGAAAATGATGTTCCTGCAAAAGTTCCGTTGGTTGGCATGGAAGCTTTGGAGGATACAGGGTTGACAGGAATTGGGAACTTTGTAAAATGTGAGTCCTCTATTCCAAAGTCATCCTCTCCTGTGGGTGGGGTGGCTTTGTCAAGTGATTCAAAATCCTTACTCAAGGCCAATGTATCTGGTTCTAGTGCTTCTATTGAGAAGGCTATGACTAGAAGGTATGCTCCTAAAAGAAAACTTTCAGCTGTCAGGGACTTCCCCCCTTTATGCGGTTGCAATGCTCCTCGTCTAAAGGAGATCTCTTTGAACGACAAGATACCGAGTCAAAAGAACTTGGCTGTAGATGACAATCCATTGAAAAAAATATCTGCCACTGATGTGCAGGAGAAGGACAATAGCATTCAAGATGGAAATGCGTGCAAGAGAAAGCTTGTGGATGTAGCTAAACCTGATCCTGAAAGGAGTGCTACAAAGAATGTGAAGAAGATGGATGCATTTGAACTACCTCAAGAAAGTAATCATCAAGTTGAAATATATTCCAAGGCAATTGTCGAAGAGGAAAATAAGGATGCTGTACAAGACCTACAGGTTGAGGGAACGTCGGGGCTAGCGATCATGGTTTTCCCAGAAGTCCAAAGTCCTGAGGAAAAGCCTTTGGATACGTCTACGTGTCAGTATAATTTGAAAGGAGATTTTAGTGGATTGCAGGATTCACCAGACAGGAAAGTGGCGCTAGGTTTGTTGTCTAAATCAGAATGTCCTCGGAGGTCTGACAAAGCTTCTTCCAAATCTAAAATGCTTGGTGTTAAAAATGAAAGGAAGGGAATGAAAGGTGGTTGTTTTGCACACCTTGACAGGTCTAAAGCTGCTTTGAAGCGTAAAGATGCACCAAGTCATTCTGGGAAGAAGCCATTGAAAAAGGAAAGAGAAAATGCCGCTTCTGGCTTACAATTAGTAGTTTTTGGAAACAAGGATTCTCTTGACTCTGATGAAAACATCGAAGACTTTCACGTTGTCCCCAAATCACATTGTTTCAATGTAAATGTTCCTCCTTTTGGTCATGGTAAATTTGGTGGTCATCTGAATAACTCAACCGTGACCCGGAATAAAGTGAGGGAAACATTACGCTTGTTTCAAGTTGTTTCTAGAAAGCTTTTGCAGCAACTAGAAGGTAACTCGAAAGAGCGAGCAAATATTTCTAAGAGGATTGACTTACAAGCGGCAAAGATTCTTAAGGAGAAAGGGAAATATGTTAACACAGGCAAGCAAATCTTGGGATGTGTCCCTGGGGTTGAAGTTGGTGATGAATTTCAGTATAGGGTGGAGCTTAATATGATTGGCCTTCATCGCCCGATTCAGGGTGGTATAGATTATGTGAAGCACGATGGTAAGATCCTTGCAACTAGTATTGTTGCATCAGGGGGTTATGCTGATGAGCTGGATAATTCGGATGTCTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCACTGCTAAACAACCTGAAGATCAGAAGCTTGAGCGGGGAAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATACGTGGCTATGAATCAACAGATGGAAGGCCCAAGACATTGGTTTATGATGGACAATATCTGGTTGAATCGTGTTGGCAGGATATGGGGCCACATGGGAAGCTGGTTTATAAGTTCCGTCTGCGAAGAATCCCAGGTCAACGTGAGCTTCCTTTGAAGGAAGTGAAGAAATCCAAAAAGTTCAAAACAAGGGAAGGTCTATGTGTTTATGATATTTCTCATGGGAAAGAGCAGATTCCAGTCTGTGCTGTGAACACTGTAGATGATGAGAAACCCCCGCCATTTATATACATAACTAGCATGATATATCCGTATGGCAATCTCAGTCGTCCTGAAGGATGTGATTGTACTAATGGATGCTCTGACTTGAATAAATGTTCTTGTGTAGTAAACAATGGGGGAGAGATCCCATTCAATCATAATGGTGCTATTGTAGAAGCAAAGCCTCTAGTCTATGAGTGTGGACCATCTTGCAAGTGCCCTTCGACATGCCATAATAGAGTCAGTCAACTCGGCATAAAGTTTCAACTTGAAATTTTTAAAACCAGTACAAGGGGATGGGGTGTGAGATCCCTAAATTCCATTCCTTCGGGAAGTTTTATCTGCGAGTATATAGGAGAACTTCTTGAAGACAAGGAAGCTGAACAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTTCAGCAACAGTACTCTCTGGGGTGGGCTTTCAACACTTATGCCTAATGCACAGTCAAGGTCTCTTGAAGTTGTGAAGGATGGCGGCTTCACCATTGATGCCGCCCAGTATGGTAATGTGGGGAGATTCATCAACCATAGTTGCTCCCCTAATCTTTATGCCCAGAATGTCCTTTATGATCATGATGACGACAGGATGCCTCACATAATGTTTTTTGCTGCTGAGAACATTCCTCCACTGCAGGAGCTGACTTACGATTATAATTACCAGATTGATCAAGTTTTTGATTCATACGGCAATATAAAAAGGAAGGACTGCTATTGTGGCTCTGTGGAATGTACTGGTAGGATGTATTGA 3171 0.4204 MTASGNIGRSEELSGKRSMENGDCTSLSRSMYKRRKVSAIRDFPEGCGPLASSVVPVLEVDIADISSANGTSVEDKNGEHSGDDTVRMSNCKADSQHSEFKKDLLLTESLRQTIDCSLKNENLVVASHHVDELSLANDDSAEEPMVGMEALKDTELTLGQTTDCSLKNENPVISSHYMSGLPLENDVPAKVPLVGMEALEDTGLTGIGNFVKCESSIPKSSSPVGGVALSSDSKSLLKANVSGSSASIEKAMTRRYAPKRKLSAVRDFPPLCGCNAPRLKEISLNDKIPSQKNLAVDDNPLKKISATDVQEKDNSIQDGNACKRKLVDVAKPDPERSATKNVKKMDAFELPQESNHQVEIYSKAIVEEENKDAVQDLQVEGTSGLAIMVFPEVQSPEEKPLDTSTCQYNLKGDFSGLQDSPDRKVALGLLSKSECPRRSDKASSKSKMLGVKNERKGMKGGCFAHLDRSKAALKRKDAPSHSGKKPLKKERENAASGLQLVVFGNKDSLDSDENIEDFHVVPKSHCFNVNVPPFGHGKFGGHLNNSTVTRNKVRETLRLFQVVSRKLLQQLEGNSKERANISKRIDLQAAKILKEKGKYVNTGKQILGCVPGVEVGDEFQYRVELNMIGLHRPIQGGIDYVKHDGKILATSIVASGGYADELDNSDVLIYTGQGGNVMSTAKQPEDQKLERGNLALKNSSEEKNPVRVIRGYESTDGRPKTLVYDGQYLVESCWQDMGPHGKLVYKFRLRRIPGQRELPLKEVKKSKKFKTREGLCVYDISHGKEQIPVCAVNTVDDEKPPPFIYITSMIYPYGNLSRPEGCDCTNGCSDLNKCSCVVNNGGEIPFNHNGAIVEAKPLVYECGPSCKCPSTCHNRVSQLGIKFQLEIFKTSTRGWGVRSLNSIPSGSFICEYIGELLEDKEAEQRTGNDEYLFDIGNNFSNSTLWGGLSTLMPNAQSRSLEVVKDGGFTIDAAQYGNVGRFINHSCSPNLYAQNVLYDHDDDRMPHIMFFAAENIPPLQELTYDYNYQIDQVFDSYGNIKRKDCYCGSVECTGRMY* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0925 1056 Pfam SAD/SRA domain 607 755 IPR003105 -
Lan18g0925 1056 CDD SET_AtSUVH-like 801 1027 - -
Lan18g0925 1056 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 483 1055 - -
Lan18g0925 1056 SMART G9a_1 603 755 IPR003105 -
Lan18g0925 1056 ProSiteProfiles Pre-SET domain profile. 820 880 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan18g0925 1056 Gene3D SET domain 772 1056 IPR046341 -
Lan18g0925 1056 ProSiteProfiles SET domain profile. 883 1026 IPR001214 GO:0005515
Lan18g0925 1056 SMART set_7 883 1032 IPR001214 GO:0005515
Lan18g0925 1056 Pfam Pre-SET motif 780 875 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan18g0925 1056 Pfam SET domain 894 1026 IPR001214 GO:0005515
Lan18g0925 1056 MobiDBLite consensus disorder prediction 470 492 - -
Lan18g0925 1056 MobiDBLite consensus disorder prediction 69 89 - -
Lan18g0925 1056 Gene3D - 589 771 IPR036987 -
Lan18g0925 1056 SMART preset_2 777 867 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan18g0925 1056 SMART PostSET_3 1040 1056 IPR003616 -
Lan18g0925 1056 MobiDBLite consensus disorder prediction 1 27 - -
Lan18g0925 1056 ProSiteProfiles Post-SET domain profile. 1040 1056 IPR003616 -
Lan18g0925 1056 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 483 1055 - -
Lan18g0925 1056 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 454 1056 IPR025794 GO:0016571
Lan18g0925 1056 ProSiteProfiles YDG domain profile. 608 751 IPR003105 -
Lan18g0925 1056 SUPERFAMILY PUA domain-like 589 765 IPR015947 -
Lan18g0925 1056 SUPERFAMILY SET domain 767 1033 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0925 Lan-Chr18 14500158 14507064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0925 550 1053 Su(var)3-9 homologs AT5G04940 42.337 9.78e-116 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan18g0925 SAD_SRA 6.9e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0925 K11420 - gmx:100803378 1271.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0403 17 2988343 2994387 Lan18g0925 18 14500158 14507064 LSH
Lan18g0925 18 14500158 14507064 Lan6g0324 6 2503832 2508120 LSH