Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0916 ATGACAACATTTGAAAAGGAAGATCTGGGTTTGAGTTTAAGCTTGAGCTTTACTCAGAATCCCTCAAATCCTATACATTTCAATCTTGTGTCTTCTCCTTATTCCTCTTCCCCTTCTGGTTGCAATCCTCAGAAACCTTCTTGGATTAATGATCCTTTCACATCTTCAGATCGTGATTCTGAAACATGCAAAGGAGAACGTGGATCATTCCTGCGAGGAATCGACGTGAATCGGTTACCTTCAGGAGTTGATTGTGAAGAAGAGGCTGGTGTTTCATCTCCAAACAGCACCGTCTCAAGCGTGAGCGGTAAACGTAGCGAAAGAGAACCCAATAGTGAAGAAAATGATAATGACAGATCCTTCTTTAGAGGAACCAGCGACGAAGAAGAGGCTAGAAAAAAACTCAGACTCTCTAAACTTCAATCCGCTGTTCTCGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCCAAGCAAAAGCTGGCACTGGCGAAGAAGCTGGGCCTTCGAGCAAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGAGCAAGGACTAAGTTGAAGCAAACTGAGGTGGACTGTGAGTTTTTGAAACGGTGTTGTGAGAATTTAACGGAGGAAAATCGGAGGTTGCAAAAAGAAGTTCATGAGCTTAGAGCACTGAAACTTTCCCCTCAATTCTACATGCACATGACCCCACCCACTACTCTCACTATGTGTCCATCGTGTGAGCATGTCACTGCTCCTTCCTCAGCCGTTGATGGTTCCACGCGTCAACATCCTATGGCCTTAACTCATCCCCGGCCCATCTCTGTTGTTAGCCCATGGGCTTCTGCCACTGCTGCTATCCCTCAAAGACCCTTCGATGGGCTTCGGCCCAGATCGTGA 888 0.4606 MTTFEKEDLGLSLSLSFTQNPSNPIHFNLVSSPYSSSPSGCNPQKPSWINDPFTSSDRDSETCKGERGSFLRGIDVNRLPSGVDCEEEAGVSSPNSTVSSVSGKRSEREPNSEENDNDRSFFRGTSDEEEARKKLRLSKLQSAVLEESFKEHNTLNPKQKLALAKKLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVHELRALKLSPQFYMHMTPPTTLTMCPSCEHVTAPSSAVDGSTRQHPMALTHPRPISVVSPWASATAAIPQRPFDGLRPRS* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0916 295 MobiDBLite consensus disorder prediction 106 128 - -
Lan18g0916 295 SMART HOX_1 130 192 IPR001356 GO:0003677
Lan18g0916 295 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Lan18g0916 295 MobiDBLite consensus disorder prediction 90 105 - -
Lan18g0916 295 Gene3D - 138 184 - -
Lan18g0916 295 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Lan18g0916 295 MobiDBLite consensus disorder prediction 32 56 - -
Lan18g0916 295 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Lan18g0916 295 PRINTS Lambda-repressor HTH signature 159 168 IPR000047 GO:0003677
Lan18g0916 295 PRINTS Lambda-repressor HTH signature 168 184 IPR000047 GO:0003677
Lan18g0916 295 PANTHER - 3 284 - -
Lan18g0916 295 MobiDBLite consensus disorder prediction 32 69 - -
Lan18g0916 295 CDD homeodomain 132 189 IPR001356 GO:0003677
Lan18g0916 295 Pfam HD-ZIP protein N terminus 5 109 IPR006712 GO:0005634
Lan18g0916 295 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 284 - -
Lan18g0916 295 SUPERFAMILY Homeodomain-like 126 189 IPR009057 -
Lan18g0916 295 Coils Coil 187 221 - -
Lan18g0916 295 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
Lan18g0916 295 MobiDBLite consensus disorder prediction 85 128 - -
Lan18g0916 295 Pfam Homeodomain 132 186 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0916 Lan-Chr18 14433521 14435799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0916 6 295 Homeobox Transcription Factor Family AT5G47370 59.935 3.68e-103 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan18g0916 HD-ZIP_N 6.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0916 K09338 - gmx:100813367 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0412 17 3052245 3054303 Lan18g0916 18 14433521 14435799 LSH