Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0896 ATGAACACTTTTTCACATGTTCCTCCTGGCTTTCGATTCCATCCAACTGATGAAGAACTTGTTGATTACTACCTTAAGAAAAAAGTAGCTTCAAAAAGGATTGATCTAGATGTAATAAAAGATGTTGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAATTATGCAAATTAGGAACGGATGAACAAGCTGAATGGTATTTCTTTAGTCATAAAGATAAGAAGTATCCAACTGGAACACGCACCAATAGAGCTACAAAGGCAGGATTCTGGAAAGCTACCGGAAGAGACAAGGCAATATATTTGAAGCATTCATTGATTGGCATGAGAAAGACTCTTGTATTCTATAAAGGAAGAGCCCCAAATGGACAGAAATCTGACTGGATCATGCACGAGTATCGACTAGAAACTAATGAAAATGGAACTCCTCATCAGGAAGAAGGCTGGGTTGTATGCAAAGTGTTCAAGAAAAGAATAACAACAGTGAGGAAAGTTGGGGAATATGAATCACAATGCAGTTGGTATGATGAACAAGTCTCCTTTATTCAAGAACTTGATCCTCGTTCTAACCCTTATACATCACAACACCAGCACTACCCTTTAAAGCAAGAGTTAGAATTAATGCAATACAATATGCCCCATGATGTTAATTTCCTCCAACTTCCACAACTTGAAAGCCCTAAAGCTCCTCAATCTTATGGCTATGATAATGACAGTGTAAGTGCTTTGCAGTCCTCGTCACTCACCCAAGAAGAACACATACATCATAGCCAACAGCAACAAAATATGCACTTGCTTTATGGTAATGCCAATGATCAAGTGATGGATTGGCGAGTACTCGACAAATTTGTTGCTTCACAGTTAAGTCATGATGATGATCAAGATGTTTCCAAGGAAATAAACTATTCAAATGTAGCTGAACAAATTACTATGCTAGCAAACCGATCCGAAAAATCGGAAATTTGCCAGGACTATGGTTCCACGTTCACCTCGAGTTGCCAGATTGACCAGTGGAAGTGA 1020 0.3863 MNTFSHVPPGFRFHPTDEELVDYYLKKKVASKRIDLDVIKDVDLYKIEPWDLQELCKLGTDEQAEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLKHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPHQEEGWVVCKVFKKRITTVRKVGEYESQCSWYDEQVSFIQELDPRSNPYTSQHQHYPLKQELELMQYNMPHDVNFLQLPQLESPKAPQSYGYDNDSVSALQSSSLTQEEHIHHSQQQQNMHLLYGNANDQVMDWRVLDKFVASQLSHDDDQDVSKEINYSNVAEQITMLANRSEKSEICQDYGSTFTSSCQIDQWK* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0896 339 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 317 - -
Lan18g0896 339 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 317 - -
Lan18g0896 339 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Lan18g0896 339 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Lan18g0896 339 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Lan18g0896 339 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0896 Lan-Chr18 14250968 14254839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0896 1 339 NAC Transcription Factor Family AT1G12260 57.459 1.44e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan18g0896 NAM 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0896 - - tcc:18606319 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0896 18 14250968 14254839 Lan18g0896 18 14250968 14254839 ECH
Lan18g0896 18 14250968 14254839 Lan6g1297 6 13734118 13738942 PCT
Lan6g1297 6 13734118 13738942 Lan18g0896 18 14250968 14254839 PCT