Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0894 ATGGCCGACGAAGCTAAAGCCAAAGGCAACGCCGCTTTCTCTTCCGGCGATTACGCAACCGCTATCCGCCACTTCTCCGACGCCATCGCTTTATCCCCAACCAACCACGTCCTCTATTCAAATCGATCCGCCGCATACGCTTCCCTTCAAAACTACACCGACGCCTTGACCGACGCCAAGAAGATCGTCGAGCTCAAGCCCGACTGGTCCAAAGGCTATAGCCGCCTCGGCGCCGCTCATATCGGTTTAGGTCAACACAGCGACGCCGTTTCGGCTTATAAGAAAGGTCTCGAAATTGATCCTAACAATGATGCCCTAAAATCCGGATTAGCAGATGCTCAGGCCGTCGCTTCCAGGTCCCGTTCGGGCCCACCGCCATCGGGAAGCCCGTTCGGCGAGGCTTTCTCCGGGCCCGAGATGTGGGCCAAGCTCACTGCTGACTCAGCCACTAGGATTTATCTTCAACAACCTGATTTTGTGAAAATGATGCAGGATATTCAGAAAGATCCGAATAATTTGAACTTGTATTTGAAGGATCAAAGAGTCATGCGAGCTATTGGGGTTTTGCTTAATGTCAAGATTCAAACCGCTAATGATGACTTTGATATTCCTGAAGCTGAGGCTTCTTTGTCTTCTTCTCCGTTGCAATCGGAGAAGAAGAGAGCTGTCGAGCCTGAACCGGAGCCTCAGCCGGAACCTATGGAAGTAGCGGACGAGGAGAAAGAGGTGAAGGAGAGGAAGGTTCAGGCTCAGAAGGAGAAAGAGGATGGTAATGCTGCGTATAAGAAGAAGGATTTCGATACCGCGATTCAGCATTACTCAAAAGCTTTGGAGTTGGATGATGAGGACATTTCATATCTCACTAATCGTGCTGCTGTTTACCTTGAGATGGGAAAGTATGAGGAATGCATTAAAGATTGTGACAAGGCCGTTGAAAGAGGAAGAGAGCTAAGATCAGACTACAAAATGATAGCAAGAGCTTTGACAAGGAAAGGAAATGCCTTAGTCAAATTGGCCAAATCGTCAAAGGATTATGATCCTGCCATTGAAACTTACCAAAAAGCACTTACAGAGCACCGCAATCCAGATACCTTGAAGAAACTGAATGAAGCTGAAAAGGCTAAGAAAGAACTCGAACAACAGGAATATTTTGATCCAAAATTGGCTGATGAGGAGAGAGAAAAAGGAAATGAATTCTTCAAGCAGCAGAAGTATCCCGAGGCTATCACGCATTACACAGAGTCCTTAAGAAGAAACCCAAATGATCCAAGGACTTACAGCAACAGAGCTGCATGCTACACTAAATTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGCATTGAGCTTGATCCTACCTTCGTAAAGGGTTATACGAGGAAAGGTGCAGTACAGTTTTTCATGAAAGAACATGAGAAGGCTTTGGAAACATATAGGGAGGGGTTGAAACATGACCCTGACAACCAAGAGATGCTTGATGGCATTTCAAGATGTGTACAACAAATTAATAAGGCCAGTCGGGGGGATTTAAGTCCTGATGAATTGAAAGAGAGACAGGCCAAGGCAATGCAGGACCCTGAGATACAGAACATTCTCCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCCAAGGCTGCACAGGAACATACAAAGAACCTAATGGTGATGAATAAGATCCAAAAGCTGATCAGTGCTGGAATTGTTCAGATGAAATAA 1737 0.4606 MADEAKAKGNAAFSSGDYATAIRHFSDAIALSPTNHVLYSNRSAAYASLQNYTDALTDAKKIVELKPDWSKGYSRLGAAHIGLGQHSDAVSAYKKGLEIDPNNDALKSGLADAQAVASRSRSGPPPSGSPFGEAFSGPEMWAKLTADSATRIYLQQPDFVKMMQDIQKDPNNLNLYLKDQRVMRAIGVLLNVKIQTANDDFDIPEAEASLSSSPLQSEKKRAVEPEPEPQPEPMEVADEEKEVKERKVQAQKEKEDGNAAYKKKDFDTAIQHYSKALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDYKMIARALTRKGNALVKLAKSSKDYDPAIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKQQKYPEAITHYTESLRRNPNDPRTYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQFFMKEHEKALETYREGLKHDPDNQEMLDGISRCVQQINKASRGDLSPDELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNLMVMNKIQKLISAGIVQMK* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0894 578 Gene3D - 128 195 - -
Lan18g0894 578 ProSiteProfiles TPR repeat profile. 457 490 IPR019734 GO:0005515
Lan18g0894 578 SUPERFAMILY TPR-like 8 502 IPR011990 GO:0005515
Lan18g0894 578 Gene3D - 509 578 - -
Lan18g0894 578 SMART CBM 137 176 IPR006636 -
Lan18g0894 578 SMART CBM 527 566 IPR006636 -
Lan18g0894 578 Gene3D Tetratricopeptide repeat domain 247 383 IPR011990 GO:0005515
Lan18g0894 578 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 577 - -
Lan18g0894 578 Pfam Tetratricopeptide repeat 7 67 - -
Lan18g0894 578 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Lan18g0894 578 Coils Coil 361 381 - -
Lan18g0894 578 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515
Lan18g0894 578 ProSiteProfiles TPR repeat profile. 250 283 IPR019734 GO:0005515
Lan18g0894 578 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Lan18g0894 578 Pfam Tetratricopeptide repeat 458 490 IPR019734 GO:0005515
Lan18g0894 578 PANTHER TPR REPEAT CONTAINING PROTEIN 1 577 IPR045248 GO:0006457|GO:0030544|GO:0051879
Lan18g0894 578 Coils Coil 234 256 - -
Lan18g0894 578 MobiDBLite consensus disorder prediction 219 258 - -
Lan18g0894 578 MobiDBLite consensus disorder prediction 207 258 - -
Lan18g0894 578 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Lan18g0894 578 Gene3D Tetratricopeptide repeat domain 387 502 IPR011990 GO:0005515
Lan18g0894 578 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Lan18g0894 578 ProSiteProfiles TPR repeat profile. 423 456 IPR019734 GO:0005515
Lan18g0894 578 SMART tpr_5 70 103 IPR019734 GO:0005515
Lan18g0894 578 SMART tpr_5 36 69 IPR019734 GO:0005515
Lan18g0894 578 SMART tpr_5 325 362 IPR019734 GO:0005515
Lan18g0894 578 SMART tpr_5 423 456 IPR019734 GO:0005515
Lan18g0894 578 SMART tpr_5 284 317 IPR019734 GO:0005515
Lan18g0894 578 SMART tpr_5 389 422 IPR019734 GO:0005515
Lan18g0894 578 SMART tpr_5 250 283 IPR019734 GO:0005515
Lan18g0894 578 SMART tpr_5 457 490 IPR019734 GO:0005515
Lan18g0894 578 SMART tpr_5 2 35 IPR019734 GO:0005515
Lan18g0894 578 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Lan18g0894 578 Pfam STI1 domain 138 191 IPR041243 -
Lan18g0894 578 Pfam STI1 domain 519 570 IPR041243 -
Lan18g0894 578 Pfam TPR repeat 396 437 - -
Lan18g0894 578 Pfam TPR repeat 257 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0894 Lan-Chr18 14215431 14219268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0894 1 99 U-box Gene Family AT3G07370 26.263 6.95e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0894 K09553 - gmx:100816776 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0894 18 14215431 14219268 Lan6g0357 6 2771016 2774489 LSH