Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0877 ATGCAAGAAGCAAACTTGTTAATGATGGGTGGTGGTGGAATCGGCGGCGACCACCAACACCGACAAGTGAAGGCGGAGATAGCCACTCACCCTCTCTATGAACAGCTTCTAGCAGCACACGTGGCATGTCTACGAGTTGCAACACCCATCGATCAGTTACCACTGATTGATGCTCAGTTATCACACTCTCATAATCTTCTTCGCTCTTATTTCTCTCAACAAACTCATTCTCTTTCACCTCATGATCGCCAAGACCTTGATAACTTCCTCGCACAATATTTGATAGTGTTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTTAGAGTTCATGCAGTCGATGCTGTCATGGCTTGTCGTGACATTGAAAATACTTTACAAGCTCTCACAGGAGCAAGTTTGGGAGAAGGAAGTGGTGCAACAATGTCAGATGATGAAGAAGATATGCGAATGGATTTGTCATTAGATCAATCCAACGGTGAAGGGCATGACATGATGGGATTTGGTCCCTTACTTCCTACTGAATCTGAAAGGTCACTTATGGAAAGAGTTCGTCAAGAACTCAAGATTGAGCTGAAGCAGGGTTTTAAGTCCAGAATTGAAGATGTTAGAGAAGAAATATTAAGGAAAAGAAGAGCTGGGAAATTACCTGGTGACACAACTTCGGTTTTAAAGAACTGGTGGCAGCAACATGCCAAGTGGCCTTACCCAACTGAAGATGACAAGGTAAAACTTGTAGAGGAGACAGGGTTGCAGCTGAAGCAAATCAACAATTGGTTCATCAACCAAAGGAAACGCAACTGGCATAGCAACTCTCAATCTGTTACCTCTTTGAAGTCCAAGCGCAAGAGGTAG 855 0.4363 MQEANLLMMGGGGIGGDHQHRQVKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSHSHNLLRSYFSQQTHSLSPHDRQDLDNFLAQYLIVLCTFKEQLQQHVRVHAVDAVMACRDIENTLQALTGASLGEGSGATMSDDEEDMRMDLSLDQSNGEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKVKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0877 284 Pfam Homeobox KN domain 227 266 IPR008422 GO:0003677|GO:0006355
Lan18g0877 284 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 284 - -
Lan18g0877 284 ProSiteProfiles ELK domain profile. 187 207 IPR005539 GO:0003677
Lan18g0877 284 SMART HOX_1 209 274 IPR001356 GO:0003677
Lan18g0877 284 Pfam KNOX1 domain 23 64 IPR005540 GO:0003677|GO:0005634
Lan18g0877 284 SMART KNOX1_2 21 65 IPR005540 GO:0003677|GO:0005634
Lan18g0877 284 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 284 - -
Lan18g0877 284 SMART KNOX2_2 76 131 IPR005541 GO:0003677|GO:0005634
Lan18g0877 284 CDD homeodomain 210 271 IPR001356 GO:0003677
Lan18g0877 284 Gene3D - 206 280 - -
Lan18g0877 284 SUPERFAMILY Homeodomain-like 209 274 IPR009057 -
Lan18g0877 284 ProSiteProfiles 'Homeobox' domain profile. 207 270 IPR001356 GO:0003677
Lan18g0877 284 Pfam KNOX2 domain 79 130 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0877 Lan-Chr18 14100077 14105287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0877 1 283 Homeobox Transcription Factor Family AT1G62990 78.498 1.46e-167 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan18g0877 KNOX2 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0877 - - gmx:100808872 507.679