Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0872 ATGCCGAAAGCAAGTTCTGATGCCAAACCCGCCGATAGCCGGTTGAAGCGCAAAGGCGCTGCAGTCGGAAGGAAGCAGACTAAGAAAGCTGCGAAAGATCCAAACAAGCCTAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATGGCTGATTTCAGAGAGGAGTTCAAGAAGGAGAATCCAAACAACAAATCTGTCGCCGCTGTCGGCAAAGCTTGCGGTAGCAAATGGAAAGAGATGAGTGATGCTGAAAAAGCTCCATACGTTGCTAAGGCAGCAAAGAAGAAAGAAGAGTATGAGAAAACTCTTCGTGCCTACACCAATGGACTGGCTTCCGGCAAAGAGGAAGAGGAGTCTGACAAGTCCAAGTCTGAAGTGAATGATGAGGATGATGATGACGAGGATGATGACGAGTAA 414 0.4783 MPKASSDAKPADSRLKRKGAAVGRKQTKKAAKDPNKPKRPPSAFFVFMADFREEFKKENPNNKSVAAVGKACGSKWKEMSDAEKAPYVAKAAKKKEEYEKTLRAYTNGLASGKEEEESDKSKSEVNDEDDDDEDDDE* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0872 137 Pfam HMG (high mobility group) box 37 105 IPR009071 -
Lan18g0872 137 SMART hmgende2 36 107 IPR009071 -
Lan18g0872 137 MobiDBLite consensus disorder prediction 106 137 - -
Lan18g0872 137 SUPERFAMILY HMG-box 24 106 IPR036910 -
Lan18g0872 137 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Lan18g0872 137 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 136 IPR031061 -
Lan18g0872 137 MobiDBLite consensus disorder prediction 1 42 - -
Lan18g0872 137 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 136 - -
Lan18g0872 137 Coils Coil 88 108 - -
Lan18g0872 137 CDD HMGB-UBF_HMG-box 37 103 - -
Lan18g0872 137 Gene3D High mobility group box domain 21 126 IPR036910 -
Lan18g0872 137 MobiDBLite consensus disorder prediction 121 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0872 Lan-Chr18 14077198 14078751 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan18g0872 HMG_box 1.4e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0872 K25507 - gmx:100499992 160.229