Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0837 ATGGGGTCTAGTGGCAGCAAAGCCACTTCATCTTGTAGTTCATCGTCGTGTTCTGGAAGTTTTCAGAAGGGTCGATCTAAAAGGTATAGAGGGTTTCAATCTTATTGTCTAGGAACAACATCTGGATCTCATGATAGTGATAATGACGAGGTTTGTGAGCAGAATAAAGTAAATGGAAGTGATGTTACATACACCAGAGGCAACGAAATAGACTCAGATGTAGTGAAAATAGATTCTTTTAGAAAGGTTAAATCTGATGAAATGTCTTGCATTCCTCCTAACCTCGACCTTGATGAGTGGGATGACACTGCATCCAGAACCGGCAGCAGCTCTGCCCATGCTTCTTCAACTCAGTCCCTGAACCCTTCAAGTCGATTCTTTTCTCGCTTTAGCCTCATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACTACCAGTTTGGGGTCATCGAGGCCTTGTCCTGTTTCTTCTGCAAGCCCCTCAATATTTAATAATGAAGGTGAGCATAATCTGCATCCACGGCATCCAGCTAGCTTGATTAATAGAAATGAACCTCAACAAGGTAGTGATCCACTTAATGCATCATTTGTTAATCAAGATCCTATACAGTGTCATGAAGATGCTTCTAATAATTTAAGATCTATCGCCTCAACAGTGGGTTCGCCTCACAACTTACAGAGAAGTCCGGCAATTTATCCTATTCAGGATGTGGTTACAGATGGAGATGGTACAAGAGAAGTGCTGGACTTGGACTTGTTTGCTCCAAGAATTCATAATGAGTCTGAAAATGTTGAGACCAGACATAGTAATAGACGAAATGGAGTTCGAGAACATGTTGAACGTAATGTTAGTTTCAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTCCGCCGATCAACTTTATCTGATTTCACCTTTTGCCCTTTGCAACAAGAGAGAGAAGCGAGAGATGCTCGTCAGGATAATGGAAGACAAGCGGGGGAGAGAGATACAAGAGTTTCACCATCTGGAGATCTCCCATCCACTATGTCTAGCTCGTTGTTTACCTTCCAAGACTATGAGGTTGAGACTTCACACTCAAGAGGAACTAGGTATCAGGATCTACTGGAACATAGGTCCAATTTCCTTGAACGGCGAAGAAGAATACGGTCCCAGGTTCGTGCTCTTCAGAGGTTGGGTGGCCGGTTTGAAAATCTTTCTGGACATGAAAGATCATGTATCTTGTCCAATCAACATAGAAATGGTCATTGTACATGCCGAATCAGCAGTCATGAACGAAGTACCAATTCGAATGATGATACTAATGCTAGTGCTAGTATTTCAAGAATTGTTATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCGTCCGTCCGTGTCTTCTATTGGATCTGTTCCAGCACCCAATGAAGCTGTGGAATCCCTGCCTGTTAAATTATACACAAAGTTGAACAAACATCAAGAAGATGATGCACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGGATACTGCCTTGCCGCCACGAATTTCACAGAACATGTATAGACAAGTGGCTGACAGAGGTTCACAGGGTATGCCCACTATGTCGCGGCGACATCTGTGTATCTGATTTAATGTCAATGGAGAACTCTAAAACACCCAGAGCTCTTTGGAATAGTGAAGTATTTTCACATGTAGTGATGTGTGACTACTAG 1752 0.4247 MGSSGSKATSSCSSSSCSGSFQKGRSKRYRGFQSYCLGTTSGSHDSDNDEVCEQNKVNGSDVTYTRGNEIDSDVVKIDSFRKVKSDEMSCIPPNLDLDEWDDTASRTGSSSAHASSTQSLNPSSRFFSRFSLIPGNISFRLSRTTSLGSSRPCPVSSASPSIFNNEGEHNLHPRHPASLINRNEPQQGSDPLNASFVNQDPIQCHEDASNNLRSIASTVGSPHNLQRSPAIYPIQDVVTDGDGTREVLDLDLFAPRIHNESENVETRHSNRRNGVREHVERNVSFSRTLSVGRLRDRVLRRSTLSDFTFCPLQQEREARDARQDNGRQAGERDTRVSPSGDLPSTMSSSLFTFQDYEVETSHSRGTRYQDLLEHRSNFLERRRRIRSQVRALQRLGGRFENLSGHERSCILSNQHRNGHCTCRISSHERSTNSNDDTNASASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEAVESLPVKLYTKLNKHQEDDAQCYICLVEYEDGDSMRILPCRHEFHRTCIDKWLTEVHRVCPLCRGDICVSDLMSMENSKTPRALWNSEVFSHVVMCDY* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0837 583 MobiDBLite consensus disorder prediction 94 121 - -
Lan18g0837 583 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 563 - -
Lan18g0837 583 SUPERFAMILY RING/U-box 495 554 - -
Lan18g0837 583 ProSiteProfiles Zinc finger RING-type profile. 507 549 IPR001841 -
Lan18g0837 583 MobiDBLite consensus disorder prediction 1 23 - -
Lan18g0837 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 554 IPR013083 -
Lan18g0837 583 MobiDBLite consensus disorder prediction 104 121 - -
Lan18g0837 583 MobiDBLite consensus disorder prediction 315 348 - -
Lan18g0837 583 MobiDBLite consensus disorder prediction 315 331 - -
Lan18g0837 583 MobiDBLite consensus disorder prediction 1 27 - -
Lan18g0837 583 Pfam Ring finger domain 506 549 IPR001841 -
Lan18g0837 583 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 563 - -
Lan18g0837 583 SMART ring_2 507 548 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0837 Lan-Chr18 13715656 13720585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0837 228 556 C3H Transcription Factor Family AT5G45290 59.644 5.85e-112 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0837 - - lang:109332924 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0837 18 13715656 13720585 Lan18g0837 18 13715656 13720585 ECH
Lan17g0480 17 3698298 3702486 Lan18g0837 18 13715656 13720585 LSH