Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0821 ATGGATGATGGCAATGGTTCTGAAAACATTATTGTCCCACTTGTTGCAATGAGCTTAGCAGCACTTATTTTCTTTATATACCATCTCATAGCTATTTTTTTGTGGAACCAAAACCACCAACATCAGCAACAGTCACTGCAAGCAGCAGCAGCACTGAGCCAGAACCATGTCATTTCTTATCCATTGGCACACTTGATTCCAATACACAAATATCACAAGAAGGGAAAAGTTGATGGTGATGAAGGTGGAGATAGTACTTGTGCTGTGTGTTTGGGAGAATTTGAAGAAGGTCAGGAGTTGAGGACCTTGCCTGAATGCATGCACTCTTTTCACGTACCATGCATTGATATGTGGCTCTATTCTCATACTAGTTGCCCCATTTGTCGCGCCATCGCCATCGCCATCGTCACGCCATTTCCGGCCATGTTCCAACTTGCCCCTTTGCCGGATATGGGTTATGGTCATAATCATATGAATCCACATCACAGCATAAACATTATGCAATTTGATTCTATTGATAATGAGTTGTTTAATTTGCACAAATGTGCTGGAAAATTCAGCTATATCAAAGTAGGAACTATAGAACAACAACAAGCTGTAAATACTGATATGGAAACTACTGGTTGCACTTAA 633 0.4076 MDDGNGSENIIVPLVAMSLAALIFFIYHLIAIFLWNQNHQHQQQSLQAAAALSQNHVISYPLAHLIPIHKYHKKGKVDGDEGGDSTCAVCLGEFEEGQELRTLPECMHSFHVPCIDMWLYSHTSCPICRAIAIAIVTPFPAMFQLAPLPDMGYGHNHMNPHHSINIMQFDSIDNELFNLHKCAGKFSYIKVGTIEQQQAVNTDMETTGCT* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0821 210 Pfam Ring finger domain 86 129 IPR001841 -
Lan18g0821 210 SUPERFAMILY RING/U-box 68 138 - -
Lan18g0821 210 SMART ring_2 87 128 IPR001841 -
Lan18g0821 210 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Lan18g0821 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 133 IPR013083 -
Lan18g0821 210 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 5 133 - -
Lan18g0821 210 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 133 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0821 Lan-Chr18 13585740 13587132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0821 12 144 C3H Transcription Factor Family AT5G17600 34.667 2.72e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0821 - - lang:109332570 416.387