Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0819 ATGGTTAAGCATAACAATGTTATCCCCAATGGCCATTTCCGTAAGCATTGGCAGAACTATGTTAAGACATGGTTCAATCAACCAGCAAGGAAAACCAGAAGACGGTTAGCAAGACAGAAGAAAGCTGTTAAGATTTTCCCCAGACCTACAGCTGGACCACTTAGACCAGTTGTTCATGGCCAAACCTTGAAATACAACATGAAGGTTAGAGCTGGCAGAGGATTTTCTCTTGAAGAACTCAAGGCTGCTGGTATTCCCAAAAGGCTTGCTCCCACTATTGGAATTGCGGTGGATCATCGCCGCAAGAATCGTTCTCTGGAAAGTCTGCAAGCTAATGCACAGAGGCTGAAAACGTACAAGGCCAAGTTGGTTGTCTTCCCAAGGCGTGCGCGCAAGGTCAAGGCTGGTGATTCTACTCCAGAGGAACTTGCAAATGCAACACAATTCCAGGGTTCATACCTGCCAATTACCACTGAGAAGCCAACTGTGGAGCTTGTTAAGGTTACAGACGAGTTGAAGGCATTTAAGGCTTATTACAAGCTCCGCCTTGAGCGCACTAACAAACGCCACCACGGTGCCAGATTGAAGAGGGCTGCTGATGCAGAAAAGGAAGAGAAGAAGTGA 624 0.4679 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRAGRGFSLEELKAAGIPKRLAPTIGIAVDHRRKNRSLESLQANAQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQFQGSYLPITTEKPTVELVKVTDELKAFKAYYKLRLERTNKRHHGARLKRAADAEKEEKK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0819 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lan18g0819 207 MobiDBLite consensus disorder prediction 188 207 - -
Lan18g0819 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lan18g0819 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lan18g0819 207 Gene3D - 167 207 - -
Lan18g0819 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Lan18g0819 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0819 Lan-Chr18 13579773 13581753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0819 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 86.387 3.36e-125 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0819 K02873 - gmx:100805957 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0492 17 3812107 3814370 Lan18g0819 18 13579773 13581753 LSH
Lan18g0819 18 13579773 13581753 Lan6g0439 6 3683736 3685618 LSH