Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0815 ATGGCGGTGAATCTGACTAGTGGTGCGATAACGGCGATGTGCAGCGACGATTCATCTACCTCTTCGGAGGATTTGAAACCAGTGCTTCAGGTCATCGATTTGAAGCAAGTTCAATCGCAGCAAAACACTGCCACCGAGAGGTTCCGTCTCGTGCTTTCTGATGGTTCGCTTTACCAACAAGGGATGCTCGCTACGCAGAAGAACGAATTGGTTCGTTCTGGAAGGTTGCAGAAGGGTTCTGTTGTTAAGCTCACTCAGTTCATTTGTAACGTTGTCCAGGAACGCAAGATTATTATCATCATTGAGCTAGATGTGGTACTTGAAAAATGTGATCTGATTGGAGAACCTGTCGCAGCACCAAGAAGTATACCTGCACGACCCGCCACTGGTCAACCAGGAGTCGCTGCTAAACCAAATGTGGCTGGTCCACCTGTTGATCATCCAAAAGTGAGCTATCCTACCAGTGCTGCTGAGCCTGTAAGATATGGCGCCTCAAATGCCCCTACTACTTATTCTAAAGTAGAGTCTGGAATCACATTACCTAGATCAACACCGTACAGTGGCTCTTCTGGTGATCAAAACATGAGTTTCCGCGGTCCACAATCAGATCCTTCAAGACCCATGCAAAACTCTTATGCTCGTCCACCTCAACCTATGTACCGACAGCCACCTCCAGTGTACAATAACCGGGGCCCTATGGCAAGAAATGAAGCTCCCCCAAGGATAATTCCAATATCTGGATTGAATCCATATCAGAATACATGGACAATTAAAGCTAGAGTAACAGCTAAGGGAGAACTGAGGCACTATAATAATGCCAGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGATGGGGGAGAAATTCGGGCAACTTGCTTCAATGCTGTAGCTGATCAGTTCTATAATGTAATTGAACCTGGTAAAGTCTATCTGATTTCCAGGGGAAGTGTAAAGCCAGCTCAAAAGAATTTTAATCACCTCAATAATGACCAAGAGCTGACCCTTGATATCACATCAATTATACAGCAATGCCCTGAAGATGATAGCTCAATTCCAAAGCAGACTTTTAACTTCCGCTCCATTATTGAATTTGAAAGATTGGAGAATAACAGCATTGTTGATGTTATTGGTGTGGTGTGTTCTGTAAGTCCTACAGCTTCAATCATGAGAAAAAATGGAACTGAAACTCAGAAGAGAACTCTCCAGTTGAAAGACATGTCAGACCGAAGTATTGAATTAACTTTGTGGGGAAACTTCTGCAATTCAGATGGGCAAAGGCTGCAAGATATTTGTGATTCTGGGGCATTTCCAATTTTGGCTGTCAAAGCTGCTAGAGTGAACGAGTTCAGTGGGAAGTCTGTTGGGACCATAAACACTAGCCAGCTATTTGTGGAGCCTGATTTTCCTGAGGCTTATAGACTGAAAGAATGGTTTGAAAAGGAAGGGAGGAATGTTCCAACTATTTCTCTTTCCAGAGAAACAGCTAGTTTTGGCAGAACTGATGCACGGAAGACTATATGTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTGTGTGTGCAAGTGTTTCATTCATTAAGGTTGATAGTTTCTGCTACACAGCTTGTCCTATCATGATAGGAGACAGGCAATGCAACAAAAAAGTGACTAATAATGGAGATGGGAAATGGCGTTGTGACAGGTGTGACCAGTCTGTTGATGCCTGTGACTATAGGTACATACTGCAATTCCAGATACAGGATCACACTGGCTTAACATGGGTCACTGCTTTCCAGGAGTGTGGTGAAGAGATCATGGGTATAGCTGCGAAAGATTTATATTATTTGAAATTTGAAGAACAAGATGATGAAAAGTTTGCAGAAATCATCCGTAAGGTTCTCTTCACCAAATATGTGTTTAAGTTAAAAGTAAAGGAGGAGACATTCAGTGATGAACAGCGTGTCAAGTCAACAGCAGTTAAAGCAGACAAGTTAAACTTTGCATCTGAGTCCAGGTTTCTTTTGGATTTGATCGAAAAACTCAAGGTTGAGAAAGCAGAAGGCACCAATCCTAACTCTTTAATGAATAATGGTGGACCAGGGAGCATTGGAACTGGACAAACTATGCCACCAGCTTACAGTAATCCTACAATGAGCACCACTAGCGGCAGTAGAGATTATGGGATGCCAGCAAATCAAGTTGGTCAGTATGGAAACCAATATAATAACAGCTCTTATGCTTCAGCCGTAGCTCCTGGTTCATATATGTCATCATGTAACAACTGTGGGGGTTCTGGTCATAGCTCTGCACAATGCCCAAGTATTGGGAATCGACCTGGACCGTCTGTGGGAGGGTCCTATTCTAACCGGGTACCTGCTGCTGGTGGATCAGGTGGTGTCTCTGGTGAATGCTTTAAATGCCATCAAACTGGTCATTGGGCCAAAGACTGTCCTGGCTTCAGTGCAGCTCCAGCATATGGTAACAATAATGTAATGCAACAAGGAAGATATGGGATTCCTCAAAAGCAACAATATGGAGGATATTGA 2556 0.4319 MAVNLTSGAITAMCSDDSSTSSEDLKPVLQVIDLKQVQSQQNTATERFRLVLSDGSLYQQGMLATQKNELVRSGRLQKGSVVKLTQFICNVVQERKIIIIIELDVVLEKCDLIGEPVAAPRSIPARPATGQPGVAAKPNVAGPPVDHPKVSYPTSAAEPVRYGASNAPTTYSKVESGITLPRSTPYSGSSGDQNMSFRGPQSDPSRPMQNSYARPPQPMYRQPPPVYNNRGPMARNEAPPRIIPISGLNPYQNTWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYNVIEPGKVYLISRGSVKPAQKNFNHLNNDQELTLDITSIIQQCPEDDSSIPKQTFNFRSIIEFERLENNSIVDVIGVVCSVSPTASIMRKNGTETQKRTLQLKDMSDRSIELTLWGNFCNSDGQRLQDICDSGAFPILAVKAARVNEFSGKSVGTINTSQLFVEPDFPEAYRLKEWFEKEGRNVPTISLSRETASFGRTDARKTICQIKDEKLGTSEKPDWISVCASVSFIKVDSFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSVDACDYRYILQFQIQDHTGLTWVTAFQECGEEIMGIAAKDLYYLKFEEQDDEKFAEIIRKVLFTKYVFKLKVKEETFSDEQRVKSTAVKADKLNFASESRFLLDLIEKLKVEKAEGTNPNSLMNNGGPGSIGTGQTMPPAYSNPTMSTTSGSRDYGMPANQVGQYGNQYNNSSYASAVAPGSYMSSCNNCGGSGHSSAQCPSIGNRPGPSVGGSYSNRVPAAGGSGGVSGECFKCHQTGHWAKDCPGFSAAPAYGNNNVMQQGRYGIPQKQQYGGY* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0815 851 ProSiteProfiles Zinc finger CCHC-type profile. 807 821 IPR001878 GO:0003676|GO:0008270
Lan18g0815 851 SMART c2hcfinal6 806 822 IPR001878 GO:0003676|GO:0008270
Lan18g0815 851 SMART c2hcfinal6 761 777 IPR001878 GO:0003676|GO:0008270
Lan18g0815 851 Gene3D - 353 492 IPR012340 -
Lan18g0815 851 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 202 683 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lan18g0815 851 MobiDBLite consensus disorder prediction 692 726 - -
Lan18g0815 851 MobiDBLite consensus disorder prediction 173 222 - -
Lan18g0815 851 SUPERFAMILY Retrovirus zinc finger-like domains 791 823 IPR036875 GO:0003676|GO:0008270
Lan18g0815 851 PANTHER REPLICATION PROTEIN A SUBUNIT 3 716 - -
Lan18g0815 851 CDD RPA1N 8 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lan18g0815 851 Pfam Replication factor-A C terminal domain 526 677 IPR013955 -
Lan18g0815 851 CDD RPA1_DBD_A 244 346 - -
Lan18g0815 851 Pfam Zinc knuckle 806 821 IPR001878 GO:0003676|GO:0008270
Lan18g0815 851 Pfam Zinc knuckle 761 777 IPR001878 GO:0003676|GO:0008270
Lan18g0815 851 MobiDBLite consensus disorder prediction 173 216 - -
Lan18g0815 851 MobiDBLite consensus disorder prediction 122 146 - -
Lan18g0815 851 CDD RPA1_DBD_B 376 483 - -
Lan18g0815 851 SUPERFAMILY Nucleic acid-binding proteins 507 684 IPR012340 -
Lan18g0815 851 Gene3D - 758 826 - -
Lan18g0815 851 Gene3D - 241 350 IPR012340 -
Lan18g0815 851 Gene3D - 493 684 IPR012340 -
Lan18g0815 851 Gene3D - 3 119 IPR012340 -
Lan18g0815 851 ProSiteProfiles Zinc finger CCHC-type profile. 762 777 IPR001878 GO:0003676|GO:0008270
Lan18g0815 851 SUPERFAMILY Nucleic acid-binding proteins 241 354 IPR012340 -
Lan18g0815 851 Pfam Replication protein A OB domain 366 468 IPR031657 -
Lan18g0815 851 Pfam Replication factor-A protein 1, N-terminal domain 5 107 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lan18g0815 851 CDD RPA1_DBD_C 512 683 IPR013955 -
Lan18g0815 851 Pfam OB-fold nucleic acid binding domain 255 344 IPR004365 GO:0003676
Lan18g0815 851 SUPERFAMILY Nucleic acid-binding proteins 1 114 IPR012340 -
Lan18g0815 851 SUPERFAMILY Nucleic acid-binding proteins 360 489 IPR012340 -
Lan18g0815 851 PANTHER REPLICATION FACTOR A 1, RFA1 3 716 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0815 Lan-Chr18 13559688 13563459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0815 1 789 Core DNA Replication Machinery Family AT5G45400 51.342 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0815 K07466 - gmx:100778597 1157.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0815 18 13559688 13563459 Lan18g0815 18 13559688 13563459 ECH