Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0798 ATGGGTCGGAAGAACGACGACGTTTCAGTCACCGAAGAATCCCCCAACAGCACCCAACTCAATTCCGAGAAGAAGAAAAAAAAGAACAAAAACAAAGACAAGCTCCAAAATGAAACTACCACTCCCAAAAGAAAGCAAAACGACATCGAACTCCAACAAAACGACACCGAATCAACCAAGAAGAAGAATAAGAAGAATAAGCACCACGTTTCAACAGACACCGTGGACGAAGAAACTAAAGTCGATAACGGAAACGGCGATGAAACGGTAACGGAACGGGTTGTGGTGGTTACTGGTAAGAACGCTGAAGATTCAAAATACGCTGCGGTTAAAACCTTCGCGGAATCAGGGCTTCCTGAGAAGGTTCTGGAATGCTGTAAGGGTTTCAAGAACCCTTCTCCGATTCAATCGCGAGCTTGGCCTTTCTTATTGGACGGTCGTGATCTCATTGGAATTGCTGCAACTGGCTCAGGGAAGACGTTGGCTTTTGGAATACCGGCCATTATGCATATTATGAAGAAAGGGAAGAATAGATCGGCGAAGGGTCGGAAACCTCTTTGTTTGATGCTCTCTCCCACTAGGGAGCTAGCTCAACAAATATCAGACGTCATGTGCGATGCTGGTAGGGCTTGTGGCGTTGAATCAATTTGTTTGTATGGCGGAACCTCCAAAGGGCCACAAATCTCATCACTGAAATCTGGTGTTGACATCATCATTGGAACCCCTGGTCGTATACAGGATCTGATTGAAATGGGTGTCTTATCCCTAAAAGAAGCATCTTTTGTGGTCCTTGATGAGGCAGATCGGATGCTTGACATGGGTTTTGAGCAAGTAGTTCGCTCCATCCTGGGTCAGACATCTTCTGTTCGTCAAATGGTAATGTTCAGTGCTACATGGCCTTTAGAAGTTCATCACTTAGCACAGGAGTTTATGGATCCTAACCCTGTGAAGGTTGTTGTAGGCTCAGAAGATCTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTGCTTGATGAACGTGCACGTGATAATCGGCTGGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGGAATCGAGTCTTGGTTTTTGTTTTATACAAAATGGAGGCCTCACGAGTTGAAAATATGCTTCAAAAAGGGGGTTGGAAGGCTGTATCAATACATGGGGACAAAGCACAGCATGCTCGTACAAAGGCACTATCATTATTCAAGGAGGGAACCTGTCCTTTGATGGTTGCTACTGATGTAGCTGCTCGGGGCTTGGATATCCCAGATGTTGAAGTGGTGATCAACTACAGTTTTCCACTAACCACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAAAAAGGTGTTGCCCATACATTCTTCACTCAGCAGAATAAGGGACTTGCTGGAGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAAATGTACCAGAGGCTCTTATGAAATTTGGTACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCCCACTTTAAGGAAATTGCTGCAGATGCTCCGAAGTCAACGAAAATCAAGTTTGACTCTGATGATGAAGACTAA 1590 0.4465 MGRKNDDVSVTEESPNSTQLNSEKKKKKNKNKDKLQNETTTPKRKQNDIELQQNDTESTKKKNKKNKHHVSTDTVDEETKVDNGNGDETVTERVVVVTGKNAEDSKYAAVKTFAESGLPEKVLECCKGFKNPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHIMKKGKNRSAKGRKPLCLMLSPTRELAQQISDVMCDAGRACGVESICLYGGTSKGPQISSLKSGVDIIIGTPGRIQDLIEMGVLSLKEASFVVLDEADRMLDMGFEQVVRSILGQTSSVRQMVMFSATWPLEVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDERARDNRLVALLEKYHKSQRNRVLVFVLYKMEASRVENMLQKGGWKAVSIHGDKAQHARTKALSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQNVPEALMKFGTHVKKKESKLYGAHFKEIAADAPKSTKIKFDSDDED* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0798 529 CDD SF2_C_DEAD 331 463 - -
Lan18g0798 529 Pfam DEAD/DEAH box helicase 134 303 IPR011545 GO:0003676|GO:0005524
Lan18g0798 529 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 11 515 - -
Lan18g0798 529 SMART ultradead3 128 334 IPR014001 -
Lan18g0798 529 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 137 IPR014014 GO:0003724
Lan18g0798 529 SMART helicmild6 373 454 IPR001650 -
Lan18g0798 529 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 263 271 IPR000629 -
Lan18g0798 529 MobiDBLite consensus disorder prediction 1 87 - -
Lan18g0798 529 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 493 IPR001650 -
Lan18g0798 529 PANTHER BNAA08G07020D PROTEIN 11 515 - -
Lan18g0798 529 Gene3D - 18 320 IPR027417 -
Lan18g0798 529 MobiDBLite consensus disorder prediction 69 87 - -
Lan18g0798 529 Pfam Helicase conserved C-terminal domain 345 454 IPR001650 -
Lan18g0798 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 467 IPR027417 -
Lan18g0798 529 Gene3D - 321 496 IPR027417 -
Lan18g0798 529 MobiDBLite consensus disorder prediction 19 61 - -
Lan18g0798 529 CDD DEADc 127 318 - -
Lan18g0798 529 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 317 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0798 Lan-Chr18 13416581 13421503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0798 110 462 Eukaryotic Initiation Factors Gene Family AT3G19760 32.676 3.24e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0798 K14811 - gmx:100305353 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0505 17 3921408 3926657 Lan18g0798 18 13416581 13421503 LSH