Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0780 ATGGGTGAAGGAAAAGTTCGCCTATCTAATGAAGTTAGAAATGGGTTAGAATATTTGAAGCGTAAAAGGCTAGAGCGTGCTAAATCTGTAACTGCCACTAAGACCAGTATTACTAACATGATGAACAGAAGTGGTGGAGATGGTTTAAGAGTTTCGGCATCTTGCGGTATCGGATTGCATAGTAATGCAGATGTCTTTTCCAAGCGGAAGGTGGATAAGTTTGACACAAGTGACCTTGAATGGACTGAAAAAATCCCAGAGTGTCCTGTGTATTCCCCAACAAAGGAAGAATTTGAGGATCCTTTGGTTTATTTGCAGAAAATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCCCCTTTGAGTGCTTCTGTTCCTGCTGGAGTTGTTTTAATGAAGGAGAACGTAGGATTCAAGTTTACAACAAGAGTGCAGCCCCTTCGCCTTGCTGAATGGGATGCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAACTTACACATTCCGTGATTATGAGAAAATGGCGAACAAGATTTTTGCGGAAAGATATTGCAGTGCTGGGTGTCTTCCAGCCACGTTCTTGGAAAACGAGTTCTGGAATGAAATCAGTTGTGGGAAGATGGAATCTGTGGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCCCCCACTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAATCTTTCGAGGTTGCCAAAATCAATTTTGCGGCTCTTGGAAATGTCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTATTTAGTATGTTTGCATGGCACGTCGAAGATCATTACCTGTACAGCATTAATTATCAGCACTGTGGAGCGTCAAAAACATGGTACGGTATTCCTGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTATATACTCATGATATTTTGTCAAGTAATGGGGAAGATGGAGCCTTCGATGTTCTTTTAGGGAAAACAACACTATTTCCTCCGAATATTTTGATGGATCATGAAGTCCCTGTGTACAAGGCTGTTCAAAAACCGGGGGAGTTTATAATAACCTTCCCTAGGGCATATCATGCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTCGCAATGGGTGACTGGTTTCCTTTAGGGGCGACTGCTAGTCGGAGATATGCACTTCTTAACAGGGCTCCTTTGCTTCCCCATGAAGAACTTCTATGCAAAGAAGCAATGATTCTCCATACAAGCTTGGAACTTGAAGATGCAGACTTTCCTTCTTCTGACTTATTGTCTCGTAATTGCATTAAGGTTGCTTTTGTCAATTTGATGCGTTACCAACATTGTGCTCGATGGTTGCTAATGAAGTCAAGGGCATCTTTATGTGTCTCTTCTCATTCTCATGGCACAATTCTCTGCACCCTCTGCAAACGTGATTGTTATATAGCTTATGTTGACTGTAACTGTCACATGCATCCTGTATGTCTACGCCATGATGTCGAATCTCTTGACTTCACCTGTGGGAGCATGTACACTCTTTATTTGAGGGAGGATATTACGGATATGGAAGCTGCCGCCAAGATGTTTGAGCTGGAAGATGGGGCATTGAACGAGATACAATATGACCAAAATCTGTATTCTTATCCCTTGTCAAACATGTTTCAGAGGGCTGAGGCAAAGGGATACACACCTTATTGTGAACTGAAACTTGATTCTGTTATAGAATTTTATTCAAGTCCGGAACAGTCAGCAAATAATCAAGAGTGTGAACCAGAAAGTCAAACTATTTTTGGACATATCTCTGAAAATCTTAAACCAGAAGTGGAATCTCTTCAGAGTAACTCTACTCTCAAACATCAGGCTGTGGGGCATGCTAATTCCAATTTCCGCACTGTTGATTTTGAAGAGTTTGGTGACAGAATACCTAACAGTGCATGTAAATCTTCGCTACCCCCTGATCAGTATCATGAAAGCTTGTGTAAACTGCCAGGTGATCTTCATAGAGTTGACACAAACCCCATTGTGTCTAATGAGAGTGATGATTCCGATTTAGAGATGTTTAGGGTAAAGCGCCCTTCTGCGCTGAAGGCGGAAAGGAGAAACGCGAAAGGTGCTATGTCATCAAAATGTATTGAACGGCAGCAGGGACTTAAACGGTTGAAGAAAGTTCTTCCTGAAGGAAGGAGTAGGTTACCAACAGATTTCAGCAGAACCAGTGGATCAAGTAACAAATATAGTCACCCTGTCAATCATAAAGTTGTTGGTGAAATTTCCTCAGGGGACAAATTTGCAAGGGGAAATGGCATTCCCATATCTATAAGGAATAAGAAGTCAGGTAATGAAGAGATAAATAGGCAAAGAGATCGCCCCAGGAAAGAAAGGTTGCAGCAGACTTATAAAGAGCCACATTCCATTGAGATAGGGCCTAAGCGACTTAAAGTTAGAGGCCCTTAA 2490 0.4169 MGEGKVRLSNEVRNGLEYLKRKRLERAKSVTATKTSITNMMNRSGGDGLRVSASCGIGLHSNADVFSKRKVDKFDTSDLEWTEKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKENVGFKFTTRVQPLRLAEWDAEDKVTFFMSGRTYTFRDYEKMANKIFAERYCSAGCLPATFLENEFWNEISCGKMESVEYACDVDGSAFSSSPTDQLGNSKWNLKNLSRLPKSILRLLEMSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVREHVYTHDILSSNGEDGAFDVLLGKTTLFPPNILMDHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGATASRRYALLNRAPLLPHEELLCKEAMILHTSLELEDADFPSSDLLSRNCIKVAFVNLMRYQHCARWLLMKSRASLCVSSHSHGTILCTLCKRDCYIAYVDCNCHMHPVCLRHDVESLDFTCGSMYTLYLREDITDMEAAAKMFELEDGALNEIQYDQNLYSYPLSNMFQRAEAKGYTPYCELKLDSVIEFYSSPEQSANNQECEPESQTIFGHISENLKPEVESLQSNSTLKHQAVGHANSNFRTVDFEEFGDRIPNSACKSSLPPDQYHESLCKLPGDLHRVDTNPIVSNESDDSDLEMFRVKRPSALKAERRNAKGAMSSKCIERQQGLKRLKKVLPEGRSRLPTDFSRTSGSSNKYSHPVNHKVVGEISSGDKFARGNGIPISIRNKKSGNEEINRQRDRPRKERLQQTYKEPHSIEIGPKRLKVRGP* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0780 829 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Lan18g0780 829 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Lan18g0780 829 MobiDBLite consensus disorder prediction 744 760 - -
Lan18g0780 829 Pfam jmjN domain 89 121 IPR003349 -
Lan18g0780 829 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Lan18g0780 829 SMART cupin_9 235 405 IPR003347 -
Lan18g0780 829 SUPERFAMILY Clavaminate synthase-like 167 421 - -
Lan18g0780 829 MobiDBLite consensus disorder prediction 737 760 - -
Lan18g0780 829 MobiDBLite consensus disorder prediction 780 829 - -
Lan18g0780 829 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Lan18g0780 829 Gene3D Cupin 81 410 - -
Lan18g0780 829 SMART JmjN_1 87 128 IPR003349 -
Lan18g0780 829 MobiDBLite consensus disorder prediction 790 829 - -
Lan18g0780 829 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 49 829 - -
Lan18g0780 829 PANTHER LYSINE-SPECIFIC DEMETHYLASE 49 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0780 Lan-Chr18 13239363 13246642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0780 85 548 JUMONJI Transcription Factor Family AT2G34880 32.222 2.74e-64 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan18g0780 JmjC 1.1e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0780 - - gmx:100798611 1328.15