Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0775 ATGAGCTTTCAGGACATCGAGTCTGGGAGGCCCTTCGCTTCACGGCGAAGCCTAATCAATGGAAAGCAGGACCCTACGCAAGCCGTAGCTTCTGGAATATTCCAGATCAATACCGCTGTTTCAACCTTTCAGAGGCTTGTTAATACCCTTGGTACCCCTAAGGATACCCCTGAACTACGAGATAAGCTGCATAAGACGAGATTGCATATTGGACAATTGGTGAAGGATACTTCGGCTAAACTTAAAGAAGCTAGTGAAATTGATCATCATTCTAATGTTAATGCAAACAAGAAGATAGCAGACGCGAAGCTTGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTGCATCTGAGAGGGAAACAGCTTACACTCCTTTTGTTCCACAAACAGCTCTTTCACCCAGCGAACTAGATGTTAGTTCTGATAAGCCTCCCGAACAGCGTGCCCTTCTCATGGAATCCAAAAGGCAGGAAGTATTGTTCCTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGCAACAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACAATGATCGATGATATTGGGTCCAACATCGAGAATTCCCATGCAGCAACCGCACAAGCAAAATCTCAACTTGCAAAAGCTTCAAAGACACAAAGATCAAATTCGTCTCTGGCATGCTTGCTTTTGGTGATATTCGGGATTGTGCTTCTAATTGTGATCATTGTGCTTGCTGCTTAG 810 0.4333 MSFQDIESGRPFASRRSLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKDTSAKLKEASEIDHHSNVNANKKIADAKLAKDFQAVLKEFQKAQRLASERETAYTPFVPQTALSPSELDVSSDKPPEQRALLMESKRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLACLLLVIFGIVLLIVIIVLAA* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0775 269 Gene3D - 170 269 - -
Lan18g0775 269 PANTHER SYNTAXIN 2 268 IPR045242 -
Lan18g0775 269 SUPERFAMILY t-snare proteins 23 231 IPR010989 GO:0016020|GO:0016192
Lan18g0775 269 CDD SNARE_Qa 196 237 - -
Lan18g0775 269 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 268 - -
Lan18g0775 269 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Lan18g0775 269 CDD SynN 23 137 IPR006011 GO:0016020
Lan18g0775 269 SMART tSNARE_6 171 238 IPR000727 -
Lan18g0775 269 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 176 238 IPR000727 -
Lan18g0775 269 Pfam SNARE domain 212 264 IPR000727 -
Lan18g0775 269 SMART SynN_4 14 127 IPR006011 GO:0016020
Lan18g0775 269 Gene3D - 20 133 - -
Lan18g0775 269 ProSitePatterns Syntaxin / epimorphin family signature. 182 221 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0775 Lan-Chr18 13184765 13188152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0775 1 257 SNARE and Associated Proteins AT5G46860 78.599 8.37e-146 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0775 - K08488 gmx:547656 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0775 18 13184765 13188152 Lan18g0775 18 13184765 13188152 ECH
Lan17g0527 17 4128939 4133340 Lan18g0775 18 13184765 13188152 LSH
Lan18g0775 18 13184765 13188152 Lan6g0484 6 4039573 4042742 LSH