Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0771 ATGGGAAGGCCACCATGTTGTGACGAGATTATTGTAAAGAAAGGTCCATGGACACCAGAAGAAGATGAGAAACTGAGTGATTATATCAACAAACATGGCCAAGGAAGTTGGAGAACACTTGCAAAGCGAGCTGGTCTCAATAGGTGTGGCAAGAGCTGCAGGCTAAGGTGGACAAACTATCTGAGGCCTGATATCAAGAGAGGCAAGTTCACTGAAGAAGAGGAGAGGCTTATCATCAACCTTCATTCTGTTCTTGGAAACAAGTGGTCTAAGATTGCAGGTCATCTTCCAGGAAGAACTGATAATGAGATCAAGAATTTCTGGAACACTAACATAAGAAAAAAGCTTCTCAAAATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGATTTCAATCACATCATGAATCTTGCACAGTTGATTGGCATGTCTAACTTTGGCAATCCTATGAGTGCTTGGAGTAACCCTCTAGGTTTTCATGCAGATGTGACTCAGCTAGCCAAACTACAACAACTGCAAAATCTGTTGCAAATTATTAACAACAATAATTCATTTGTTAACATGGGGAACCCTTCCTTCTCAGGCAATCCTAGCCTCAACCCACTTGATGCATTTCTGAATGGGACAAATATCATTCAAACTCAGGAGCCAGCTTTCTCGAGAGGCCAAGAGTATGCAAACCCTGGTTTATTCTCTCAAACACACAGTGACTCCTCAAAATCATGGACAGATGTAGAAGGTGGATCTACTAGTCATCAAGAATTTGATTACAACAAAGTTAGCAGCAATACTTCACTTGAAAATCAAGCACAAACTCCACTCCCTGCATTAGTTGCTTTCTCTCCAAAGATGGAAACCTTCAACCAAAAGGACAATGGTTATGAAAAAGCTCAAGCTCCGATTCAATCACCTTCCAACACATTCTTTAATGATTGGGAGGAGTTCCTTGACAACGAAAGAAGCGATTCCTGCTGGAAAGAGATTCTAGATTTGACATCCTCTTCAACATCACCAATTTCCTGGTAG 1029 0.413 MGRPPCCDEIIVKKGPWTPEEDEKLSDYINKHGQGSWRTLAKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERLIINLHSVLGNKWSKIAGHLPGRTDNEIKNFWNTNIRKKLLKMGIDPETHKPRTDFNHIMNLAQLIGMSNFGNPMSAWSNPLGFHADVTQLAKLQQLQNLLQIINNNNSFVNMGNPSFSGNPSLNPLDAFLNGTNIIQTQEPAFSRGQEYANPGLFSQTHSDSSKSWTDVEGGSTSHQEFDYNKVSSNTSLENQAQTPLPALVAFSPKMETFNQKDNGYEKAQAPIQSPSNTFFNDWEEFLDNERSDSCWKEILDLTSSSTSPISW* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0771 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan18g0771 342 CDD SANT 69 112 IPR001005 -
Lan18g0771 342 Gene3D - 13 66 - -
Lan18g0771 342 CDD SANT 16 61 IPR001005 -
Lan18g0771 342 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lan18g0771 342 Gene3D - 69 135 - -
Lan18g0771 342 PANTHER MYB TRANSCRIPTION FACTOR 1 333 - -
Lan18g0771 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan18g0771 342 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lan18g0771 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan18g0771 342 MobiDBLite consensus disorder prediction 233 255 - -
Lan18g0771 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 333 - -
Lan18g0771 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan18g0771 342 ProSiteProfiles Myb-like domain profile. 13 61 IPR001005 -
Lan18g0771 342 SMART sant 66 114 IPR001005 -
Lan18g0771 342 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0771 Lan-Chr18 13144468 13146523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0771 1 331 MYB Transcription Factor Family AT5G16770 48.127 2.77e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan18g0771 Myb_DNA-binding 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0771 K09422 - gmx:778082 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0771 18 13144468 13146523 Lan18g0771 18 13144468 13146523 ECH
Lan18g0771 18 13144468 13146523 Lan6g0488 6 4083200 4085658 LSH