Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0769 ATGCCAAAAAAGAAAACAAAAGACCCAAAACAAAACGCTCAAACCGACGTCGTATTACCCCCTTTCGGCATTTTCAGCACACTCTTCGATAACGCGACGGAACATGTCCCCACCACCGCTAACGCCTCCGCTTCTCTATTTTCCGATAACAACCCATTTCGAAGGAAGCCGCAACAATATACTCCAATTTCTGAATCACCCAAATCCACTCAAATCCTAAACAATGGCGTCTCCGAGAACCACGATTACATTGATGAGAAGAAGAGGAAGCGGAACAAGGAGGAGAAAAATCCCACTGCAACCGCTGATCCTGATTCATTAATCGAAGTTTCAGAGAAGAAGAATGATAAAAAAAAGAAGAAACAAGCTTCTGATGAAGAGAACAAAGGTTCTGACATGGCTGTGGAGCCAATTGGGTACAGTGAGGTTGCGAAGGAAGATGATGAAACTGAGAGGAAGATGAAAAAGAAGAAAAAGAATCAGGGTTCTGATGAAGAGAATAAAGGTTCTGACTTGATTGCAGAAACAACTGAAAAAGGTGAGAGTAATTATGAAGGCGATGAGAGGAAGAAGAAGAAGAGAAAAAGGGAAGAGCTTGAGAAAGAATGGGAGGAGAAGAAGTATGGGGTTATGGAAGGTGAAGTGGAAGGAGAAGGGTTGGAAAAGAAAACTGTTGGGAGCAAGAGGAAAGCATTGGATAATGCTGCTGATATGCTTGTTTCGAAGGAAGGTTTCGATGATGAAGATAAGCTCTTGAGGACTGTTTTTGTTGGAAATTTGCCTCTTAAGGTGAAGAAGAAGACTTTGTTGAAGGAGTTCAAGAAATTTGGTGAGGTTGAATCTGTGAGGATTCGTTCTGTTCCAATACAAGATACCAAAAAACCTAAGAAGGGTGCTATTCTTGCAAAGAAAATAAATGACGATGGTGATAGTGTTCACGCTTACATTGTTTTCAAAACAGAGGAATCTGCTCAGGCTTCTTTGTCACACAACATGGCTGTGGTGGAAGGAAATCACATTCGCGTTGACAGGGCATGTCCACCCCGCAAGAAACAGAAATGCGAGAGTGCTCTGCTTTATGATAACAAGAGAACAGTTTTTGTGGGCAACCTCCCATTTGATGTAAAGGATGAAGAACTATATCAGTTATTTTGTGGTAAATCTGACCTGGAATCCAATGTAGAAGCTGTTAGAGTCATTAGAGATTCTCATCTTAATGTTGGAAAGGGAATTGCCTATGTGCTGTTTAAAACAAGGGAAGCTGCTAATTTTGTCATTAGGAAACGGAACTTGAGGCTTCGAGATCGAACGTTGAGAATCTCTCATGCCAAAGCTGATGCCACCCCATCTAAAAGGCCATACCCGTCGCCTGTACGAGCTCCTAGTACCCCTGCAAAGAAGATGGCCTTGGGTTCAAGGTCTCCATTAAGTAGTGATAACAGGTCAGACAGAAAAGCTAAGGCATCTTACCAGGGTCTGCACGCAAGCAAATCTGATATCCAAAAGAAAGCTCATGGTGGAGAAAAACCAAAAGAGCGCTTGGTGAAACGACCTTCGGTTGCTGCCAGAAAGGCTAAAGCAAACTCTCACATGGATGCTACTCCATCAAAACAAGCAGCCGGGATAAAACGGAAGTTCGACGCTCGCACTCCAGATAGCTCCGTACGACATAAGAAATTCAAAAGGGACAGGTAG 1695 0.4295 MPKKKTKDPKQNAQTDVVLPPFGIFSTLFDNATEHVPTTANASASLFSDNNPFRRKPQQYTPISESPKSTQILNNGVSENHDYIDEKKRKRNKEEKNPTATADPDSLIEVSEKKNDKKKKKQASDEENKGSDMAVEPIGYSEVAKEDDETERKMKKKKKNQGSDEENKGSDLIAETTEKGESNYEGDERKKKKRKREELEKEWEEKKYGVMEGEVEGEGLEKKTVGSKRKALDNAADMLVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPKKGAILAKKINDDGDSVHAYIVFKTEESAQASLSHNMAVVEGNHIRVDRACPPRKKQKCESALLYDNKRTVFVGNLPFDVKDEELYQLFCGKSDLESNVEAVRVIRDSHLNVGKGIAYVLFKTREAANFVIRKRNLRLRDRTLRISHAKADATPSKRPYPSPVRAPSTPAKKMALGSRSPLSSDNRSDRKAKASYQGLHASKSDIQKKAHGGEKPKERLVKRPSVAARKAKANSHMDATPSKQAAGIKRKFDARTPDSSVRHKKFKRDR* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0769 564 Gene3D - 359 451 IPR012677 -
Lan18g0769 564 CDD RRM2_RBM34 365 441 IPR034221 -
Lan18g0769 564 MobiDBLite consensus disorder prediction 107 132 - -
Lan18g0769 564 MobiDBLite consensus disorder prediction 442 564 - -
Lan18g0769 564 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 185 561 - -
Lan18g0769 564 MobiDBLite consensus disorder prediction 43 78 - -
Lan18g0769 564 SUPERFAMILY RNA-binding domain, RBD 361 456 IPR035979 GO:0003676
Lan18g0769 564 SMART rrm1_1 365 441 IPR000504 GO:0003723
Lan18g0769 564 SMART rrm1_1 254 343 IPR000504 GO:0003723
Lan18g0769 564 MobiDBLite consensus disorder prediction 498 519 - -
Lan18g0769 564 Gene3D - 249 353 IPR012677 -
Lan18g0769 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 297 IPR000504 GO:0003723
Lan18g0769 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 366 438 IPR000504 GO:0003723
Lan18g0769 564 MobiDBLite consensus disorder prediction 542 564 - -
Lan18g0769 564 MobiDBLite consensus disorder prediction 141 203 - -
Lan18g0769 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 347 IPR000504 GO:0003723
Lan18g0769 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 445 IPR000504 GO:0003723
Lan18g0769 564 SUPERFAMILY RNA-binding domain, RBD 246 353 IPR035979 GO:0003676
Lan18g0769 564 MobiDBLite consensus disorder prediction 43 203 - -
Lan18g0769 564 PANTHER RNA-BINDING PROTEIN 34 185 561 - -
Lan18g0769 564 MobiDBLite consensus disorder prediction 80 100 - -
Lan18g0769 564 CDD RRM1_RBM34 253 343 IPR034220 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0769 Lan-Chr18 13131959 13136429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0769 255 444 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 1.75e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0769 K14837 - gmx:100809622 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0769 18 13131959 13136429 Lan18g0769 18 13131959 13136429 ECH
Lan18g0769 18 13131959 13136429 Lan6g0490 6 4095188 4099353 LSH