Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0767 ATGGATCATACCCGAGACAGCAACGTTGTTCAAATAATCACCGGCGGTGAAAACTGGTCCTCCTCCGTCTCCGGCGACCAATCCGTTTGGGCAACCGAAGATGATTACAGATTCTTCAACACCAACAACGACGCTGACTCTACCCCAAAGAGATCGAGGAACTCGCAGGAAGCAACACCGTCGTCTAGCAATAACCGTTCCAAAGCGATTGGGAAAATGTTCTTCAAGACGAAGCTTTGTTGCAAGTTCCGTACCGGCACGTGTCCCTACGTGACTAACTGTAACTTCGCGCACAGTATTGAGGAGCTGCGGCGGCCACCGCCGAACTGGCAGGAGATTGTGGCGGCGCACGAGGAGGAGAAACCGGTACCGCCGGTGGAAGAGTTTCAGATTCCTTCGCTTTCGGGGTATTCAGGGGAGGTGCAGAGGTCTTATAAGGGGAGACATTGCAAGAAGTTTTATACTGAGGAAGGGTGTCCCTATGGTGATAGTTGCACTTTTTTGCATGATGAGAATTCCAGGAATAGAGAGAGCGTGGCTATAAGTTTGGGACCTGGTGGGTATGGTGGAGGTAGTGGTGGGGGCGATGGTGGTGGTGCTGGGAGTAGTGGTGGTGGTGGCGGCGGTAGTTCGAATTTGAAGCCTTCGAATTGGAAGACTAGGATTTGCAATAAGTGGGAGATGACAGGGTATTGCCCGTTTGGGAACAAATGCCATTTTGCTCATGGTGCTACAGAGTTGAGCACTCATGGTGAGTTTGTGGAGGGAGAAAATGGAGACACCACATTTGCCGGAACTCCTGACACGAAACATGGAGGACTACCTTCAAAAACTCCTGCTGATAGTGTAGTTGCATCAGTTATTCCAGTTGCTCATTCTGATGTCTATCATATTGGTGTTCCTTCACAAAGGCCTCCCATTGTGATTCAGAGGCCAGGACAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATAAGTAGGATATATGGTGATTGGATTGATGACATCGAATAG 1017 0.4936 MDHTRDSNVVQIITGGENWSSSVSGDQSVWATEDDYRFFNTNNDADSTPKRSRNSQEATPSSSNNRSKAIGKMFFKTKLCCKFRTGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEEEKPVPPVEEFQIPSLSGYSGEVQRSYKGRHCKKFYTEEGCPYGDSCTFLHDENSRNRESVAISLGPGGYGGGSGGGDGGGAGSSGGGGGGSSNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELSTHGEFVEGENGDTTFAGTPDTKHGGLPSKTPADSVVASVIPVAHSDVYHIGVPSQRPPIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0767 338 SUPERFAMILY CCCH zinc finger 144 172 IPR036855 GO:0046872
Lan18g0767 338 MobiDBLite consensus disorder prediction 179 214 - -
Lan18g0767 338 SUPERFAMILY CCCH zinc finger 214 248 IPR036855 GO:0046872
Lan18g0767 338 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 335 IPR045877 GO:0003729
Lan18g0767 338 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 14 335 - -
Lan18g0767 338 ProSiteProfiles Zinc finger C3H1-type profile. 74 101 IPR000571 GO:0046872
Lan18g0767 338 SUPERFAMILY CCCH zinc finger 72 105 IPR036855 GO:0046872
Lan18g0767 338 Pfam CCCH-type zinc finger 148 170 IPR041367 -
Lan18g0767 338 ProSiteProfiles Zinc finger C3H1-type profile. 217 245 IPR000571 GO:0046872
Lan18g0767 338 SMART c3hfinal6 217 244 IPR000571 GO:0046872
Lan18g0767 338 SMART c3hfinal6 74 100 IPR000571 GO:0046872
Lan18g0767 338 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Lan18g0767 338 MobiDBLite consensus disorder prediction 40 67 - -
Lan18g0767 338 Gene3D - 69 105 - -
Lan18g0767 338 Gene3D - 209 249 - -
Lan18g0767 338 Gene3D - 137 184 - -
Lan18g0767 338 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Lan18g0767 338 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 75 99 IPR000571 GO:0046872
Lan18g0767 338 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 243 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0767 Lan-Chr18 13114882 13118822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0767 219 247 C3H Transcription Factor Family AT1G68200 62.069 3.51e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan18g0767 zf-CCCH 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0767 - - lang:109349089 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0767 18 13114882 13118822 Lan18g0767 18 13114882 13118822 ECH