Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0757 ATGAATCTCTGGATTGACGACACCACCACCACTTCTTCTGACCTCCCCTACCTCTGGCCACCTCCCACGCCGTCACTCCCACAACCACCACCACCACCACCACTCCAACAACCGCTATCCAACCAAGACACCCTCCAGCAACGCCTCCAAACCCTCACTGAAGGCCACACCACCACCCACGTCTGGACCTACGCCATATTCTGGCAATCATCTTATAACCATTCCTCTTCTTCCACCCTCCTTCATTGGGGTGACGGTTACTATAAAGGCACTGATGATGATAAATCCAAACACAACAACACCAAAAAAACTTCATCTGCTGAACAGGACCACCGTAAGAAAGTCCTTCGCGAACTAAACTCTCTCATCAATGGTTCCTCAACCGAAAATAACATTGTATATGATGAAGTCACCGACACTGAATGGTTTTTCCTCGTTTACATGACTCAGTCCTTCGTCGATGGTTCCGGTTTACCTGGACAGGCTTTATCTAACTCGAACCCGGTTTGGGTCTCCGGTTCAGACCGGCTAGCTGGGTCGGTTTGTGAGAGGGCGAGACAGGCACAGGTTTTCGGACTTCAAACCATTGTTTGTATACCGGTCGCAGATGGGGTTGTGGAGCTGGGGTCCACTGAATTTGTTTTCCAAAACCATGATCTCATGAACAATGTAAGATTCTTGTTCAATTTCAACAACAATGATAATAATCGGGACATGGGTTCATGGCCCTTCACTGCTAGCACCACCACTACAAGTAAAGACCAATGTGGAAATGACCTTTCTCTATGGCTTAATGATGCTGAATTTAGGGATTCTGTGAATGTTAATACAAACAATACTGTTGTTGTTCCTGCTACTACTGGTAACTTTTCGGTTTCGGTTTCAGTTTCTATTCCGAGCTTGAACAATAGTCATAGCAATAACAATAAGGCTATTTCCAAAAAGACACATTTTGAAACCTCTAGTACCAGTACTTTAACCAAAACCCCAAGTGCTATTAACTTGCCTAATAAGTGTCATGGCCAGAAGAATCAGCAACAGCAGCAGGGCTTATTTTTTAGGGAATTGAACTTTTCCGCATATGGATTTGAAGGAAATGTTGTGAAGAATGGGAGCAGCTAACATAACCACCTTTCTCTGAATCCGGAATGTGGTGAGATTTTGAGCTTTGGGGAGAGCAAGAAAAAATCTTACACTGGCGCAAATGGAAACTCTTCTCATTTTTTCTCTGGTCAGTCTCAATTTGCTGCTGCACCTACTGGTGCAGGGGAGAATAGCAAGAAGAGTATGTCCCCGACATCGAGGAGCAGCAATGATGATGGCGTGCTATCCTTCACATCAGGTGTTGTTTTGCCGGCTTCGATTTCGAATATGAGATCTGGTGGTGGTGATTCCGACCATTCAGATATTGAGGCTTCTGTGGTGAAGGACCCTGAGAGCAGTAGAGTGGTGGAACTGGAAAAACGGCTCCGAAAAAGAGGGAGGAAACCGGCAAAGGGCAGAGAGGAACCATTGAATCATGTTGAAGCAGAGAGGCAGAGGAGGGAAAAGCTGAATCAGAGATTCTATGCGCTTCGTGCTGTGTTTCCAAATGTGTCGAAGATGGACAAAGCATCGCTTATGGGGGCCATTTCTTACATTACTGAGCTGAAATCCAAGCTTCAGAACCTTGAATCAGATAAAGATGGTTTGCAGAAGCAATTAGATGCAGCGAAGAAGGAACTCGAAAAAAACACCAAAGATTCAGGTGCATCACCTCCACTTGATAAGGATTTGAAGATGCTAAATAATGTTGGAAGCTATAAGCTGATTGATTTGGACATCGATGTTAAGATTATTGGTTGGGATGTAATGATAAGGATCCAATGTAGCAAGAGGAATAACCCTGCAGTGAGATTAATGATGGCTTTGATGGAATTGGATTTGGATGTGCACCATGCCAGTGTGTCAGTGGTGAATGATTTGATGATCCAGCAAGCAACAGTGAAAATGGGAAGCATATTTTATACTCAGGAGCAGCTATGTGCAGCATTGTCGTCCAAAGTTGGTGATGGCAAATGA 2061 0.4459 MNLWIDDTTTTSSDLPYLWPPPTPSLPQPPPPPPLQQPLSNQDTLQQRLQTLTEGHTTTHVWTYAIFWQSSYNHSSSSTLLHWGDGYYKGTDDDKSKHNNTKKTSSAEQDHRKKVLRELNSLINGSSTENNIVYDEVTDTEWFFLVYMTQSFVDGSGLPGQALSNSNPVWVSGSDRLAGSVCERARQAQVFGLQTIVCIPVADGVVELGSTEFVFQNHDLMNNVRFLFNFNNNDNNRDMGSWPFTASTTTTSKDQCGNDLSLWLNDAEFRDSVNVNTNNTVVVPATTGNFSVSVSVSIPSLNNSHSNNNKAISKKTHFETSSTSTLTKTPSAINLPNKCHGQKNQQQQQGLFFRELNFSAYGFEGNVVKNGSS*HNHLSLNPECGEILSFGESKKKSYTGANGNSSHFFSGQSQFAAAPTGAGENSKKSMSPTSRSSNDDGVLSFTSGVVLPASISNMRSGGGDSDHSDIEASVVKDPESSRVVELEKRLRKRGRKPAKGREEPLNHVEAERQRREKLNQRFYALRAVFPNVSKMDKASLMGAISYITELKSKLQNLESDKDGLQKQLDAAKKELEKNTKDSGASPPLDKDLKMLNNVGSYKLIDLDIDVKIIGWDVMIRIQCSKRNNPAVRLMMALMELDLDVHHASVSVVNDLMIQQATVKMGSIFYTQEQLCAALSSKVGDGK* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0757 685 Gene3D - 492 580 IPR036638 GO:0046983
Lan18g0757 685 MobiDBLite consensus disorder prediction 463 509 - -
Lan18g0757 685 Coils Coil 546 580 - -
Lan18g0757 685 MobiDBLite consensus disorder prediction 91 111 - -
Lan18g0757 685 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 501 550 IPR011598 GO:0046983
Lan18g0757 685 PANTHER TRANSCRIPTION FACTOR MYC2 28 682 - -
Lan18g0757 685 CDD bHLH_AtAIB_like 498 573 - -
Lan18g0757 685 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 502 569 IPR036638 GO:0046983
Lan18g0757 685 MobiDBLite consensus disorder prediction 1 16 - -
Lan18g0757 685 Pfam Helix-loop-helix DNA-binding domain 505 549 IPR011598 GO:0046983
Lan18g0757 685 PANTHER MYC 28 682 IPR045084 GO:0003700|GO:0006355
Lan18g0757 685 MobiDBLite consensus disorder prediction 455 509 - -
Lan18g0757 685 MobiDBLite consensus disorder prediction 17 38 - -
Lan18g0757 685 MobiDBLite consensus disorder prediction 415 441 - -
Lan18g0757 685 MobiDBLite consensus disorder prediction 1 44 - -
Lan18g0757 685 SMART finulus 507 555 IPR011598 GO:0046983
Lan18g0757 685 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 45 228 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0757 Lan-Chr18 13015867 13018385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0757 41 682 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 49.155 7.09e-180 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan18g0757 bHLH-MYC_N 1.2e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0757 K13422 - gmx:100776289 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0535 17 4237933 4240640 Lan18g0757 18 13015867 13018385 LSH
Lan18g0757 18 13015867 13018385 Lan6g0504 6 4247915 4250274 LSH