Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0750 ATGTCTCCGCCGCTGCTAGTTACGGAGGAGGAAGGGCAGAACAAAGTCTCGTCGATGGTAGCATCTGCATCTTCACAATCCTTAGACTGTTTCTCCCAAACTGGGGTTGAATTGAAGGAAAGAAATTACATGGGATTGTCTGATTGCTCATCAGTGGACAGTTCTAGTCCTACTGTCCCAAGCTTCTCTGATGAGAAAAAAGGGATCCTGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCTGGATCGCAATCGCCCGAAAGGATCACAGATCTTTACTCTTTAAGCTCGGCAAAACTTGATGAAAAGCCACTGTTCCCTTTGCTTCCTATGAAAGATGAAATCTGCTTGTCATCCCAGAAGACTGTGGTTTCGGGCAACAAAAGAGGTTTTGCTGATACCATGGATGGGTTCCCTCAGGGGAAGTTTACTGGCAATACAGGGATGGGTGTAATGCTGTCGCCTAGACCTTCTGGAGCTCAGCCCAGAACAGTGCAAGAAATTCCAAACAAGGTGTTACAAGAACGGCCTTGTGCAGCTAATGATTCTTCCATCAGTAGTATGGCTCCGGCTTCTAAGGCACAGGTCGTTGGATGGCCTCCTATCAGATCATTTAGGAAGAACTCGATGGCCACCACTTCAAAGAACAATGAAGTTGATGGAAAACCAGGCCCGACCGCTCTCTTTGTGAAGGTCAGCATGGATGGTGCCCCTTATCTTAGGAAGGTAGATCTAAGAAATTATACAACATATCAGGAACTATCTTGTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTTGGTCAGTGTGGCTCCCATGGAGCTCCAGGAAAAGAAATGTTGAGTGAGAGTAAGCTAAGGGACCTTCTACGTGGTTCAGAATATGTGGTCACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTCATTGACACTTGCAGAAGGCTGAAAATCATGAAGGGTTCCGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG 1047 0.4651 MSPPLLVTEEEGQNKVSSMVASASSQSLDCFSQTGVELKERNYMGLSDCSSVDSSSPTVPSFSDEKKGILNLKATELRLGLPGSQSPERITDLYSLSSAKLDEKPLFPLLPMKDEICLSSQKTVVSGNKRGFADTMDGFPQGKFTGNTGMGVMLSPRPSGAQPRTVQEIPNKVLQERPCAANDSSISSMAPASKAQVVGWPPIRSFRKNSMATTSKNNEVDGKPGPTALFVKVSMDGAPYLRKVDLRNYTTYQELSCALEKMFSCFTLGQCGSHGAPGKEMLSESKLRDLLRGSEYVVTYEDKDGDWMLVGDVPWEMFIDTCRRLKIMKGSDAIGLAPRAMEKSKSRS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0750 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 341 IPR003311 GO:0005634|GO:0006355
Lan18g0750 348 MobiDBLite consensus disorder prediction 1 20 - -
Lan18g0750 348 PANTHER AUXIN-INDUCED PROTEIN 14 341 - -
Lan18g0750 348 Pfam AUX/IAA family 75 339 IPR033389 -
Lan18g0750 348 Gene3D - 225 342 - -
Lan18g0750 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
Lan18g0750 348 SUPERFAMILY CAD & PB1 domains 225 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0750 Lan-Chr18 12949744 12954008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0750 227 333 B3 DNA Binding Superfamily AT5G37020 31.776 9.20e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lan18g0750 AUX_IAA 7.3e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0750 K14484 - gmx:547502 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0544 17 4350654 4356498 Lan18g0750 18 12949744 12954008 LSH
Lan18g0750 18 12949744 12954008 Lan6g0512 6 4325656 4329744 LSH